data_7W4O # _model_server_result.job_id gbFO_HZsnZwzzlUyEB-_SQ _model_server_result.datetime_utc '2024-11-04 23:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":1605}' # _entry.id 7W4O # _exptl.entry_id 7W4O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W4O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 R N N ? 6 W N N ? 6 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 B OE1 GLN 775 B GLN 775 1_555 J MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 B OD2 ASP 854 B ASP 854 1_555 J MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc3 I O2B ADP . B ADP 1601 1_555 K MG MG . B MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 I O3B ADP . B ADP 1601 1_555 K MG MG . B MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc5 J MG MG . B MG 1602 1_555 M O1B ATP . B ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 D OE1 GLN 775 D GLN 775 1_555 O MG MG . D MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 D OD2 ASP 854 D ASP 854 1_555 O MG MG . D MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc8 N O2B ADP . D ADP 1601 1_555 P MG MG . D MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 N O3B ADP . D ADP 1601 1_555 P MG MG . D MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc10 O MG MG . D MG 1602 1_555 R O1B ATP . D ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc11 F OE1 GLN 775 F GLN 775 1_555 T MG MG . F MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc12 F OD2 ASP 854 F ASP 854 1_555 T MG MG . F MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc13 S O2B ADP . F ADP 1601 1_555 U MG MG . F MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 S O3B ADP . F ADP 1601 1_555 U MG MG . F MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc15 T MG MG . F MG 1602 1_555 W O1B ATP . F ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc16 H OE1 GLN 775 H GLN 775 1_555 Y MG MG . H MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 H OD2 ASP 854 H ASP 854 1_555 Y MG MG . H MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc18 X O2B ADP . H ADP 1601 1_555 Z MG MG . H MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc19 X O3B ADP . H ADP 1601 1_555 Z MG MG . H MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc20 Y MG MG . H MG 1602 1_555 BA O1B ATP . H ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7W4O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ADP B 1 1601 2002 ADP ADP . J 4 MG B 1 1602 2003 MG MG . K 4 MG B 1 1603 2004 MG MG . L 5 E2H B 1 1604 2005 E2H LIG . M 6 ATP B 1 1605 3004 ATP ATP . N 3 ADP D 1 1601 2002 ADP ADP . O 4 MG D 1 1602 2003 MG MG . P 4 MG D 1 1603 2004 MG MG . Q 5 E2H D 1 1604 2005 E2H LIG . R 6 ATP D 1 1605 3004 ATP ATP . S 3 ADP F 1 1601 2002 ADP ADP . T 4 MG F 1 1602 2003 MG MG . U 4 MG F 1 1603 2004 MG MG . V 5 E2H F 1 1604 2005 E2H LIG . W 6 ATP F 1 1605 3004 ATP ATP . X 3 ADP H 1 1601 2002 ADP ADP . Y 4 MG H 1 1602 2003 MG MG . Z 4 MG H 1 1603 2004 MG MG . AA 5 E2H H 1 1604 2005 E2H LIG . BA 6 ATP H 1 1605 3004 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . BA 6 58.45 183.831 71.181 1 59.4 ? PG ATP 1605 H 1 HETATM 2 O O1G ATP . . . BA 6 58.461 183.384 69.762 1 64.41 ? O1G ATP 1605 H 1 HETATM 3 O O2G ATP . . . BA 6 59.743 183.505 71.94 1 57.81 ? O2G ATP 1605 H 1 HETATM 4 O O3G ATP . . . BA 6 58.121 185.315 71.352 1 59.93 ? O3G ATP 1605 H 1 HETATM 5 P PB ATP . . . BA 6 56.601 181.653 72.051 1 51.63 ? PB ATP 1605 H 1 HETATM 6 O O1B ATP . . . BA 6 57.6 180.57 72.042 1 58.07 ? O1B ATP 1605 H 1 HETATM 7 O O2B ATP . . . BA 6 55.571 181.609 70.924 1 46.91 ? O2B ATP 1605 H 1 HETATM 8 O O3B ATP . . . BA 6 57.307 183.073 71.991 1 48.84 ? O3B ATP 1605 H 1 HETATM 9 P PA ATP . . . BA 6 54.935 180.8 74.35 1 35.73 ? PA ATP 1605 H 1 HETATM 10 O O1A ATP . . . BA 6 55.747 180.228 75.443 1 47.37 ? O1A ATP 1605 H 1 HETATM 11 O O2A ATP . . . BA 6 54.288 179.763 73.441 1 51.56 ? O2A ATP 1605 H 1 HETATM 12 O O3A ATP . . . BA 6 55.796 181.762 73.421 1 43.88 ? O3A ATP 1605 H 1 HETATM 13 O O5' ATP . . . BA 6 53.816 181.768 74.906 1 48.5 ? O5' ATP 1605 H 1 HETATM 14 C C5' ATP . . . BA 6 52.421 181.558 74.6 1 47.05 ? C5' ATP 1605 H 1 HETATM 15 C C4' ATP . . . BA 6 51.52 182.358 75.517 1 39.71 ? C4' ATP 1605 H 1 HETATM 16 O O4' ATP . . . BA 6 51.447 181.735 76.815 1 47.05 ? O4' ATP 1605 H 1 HETATM 17 C C3' ATP . . . BA 6 51.888 183.823 75.751 1 37.83 ? C3' ATP 1605 H 1 HETATM 18 O O3' ATP . . . BA 6 50.741 184.663 75.7 1 50.24 ? O3' ATP 1605 H 1 HETATM 19 C C2' ATP . . . BA 6 52.55 183.827 77.136 1 39.1 ? C2' ATP 1605 H 1 HETATM 20 O O2' ATP . . . BA 6 52.167 184.976 77.883 1 49.37 ? O2' ATP 1605 H 1 HETATM 21 C C1' ATP . . . BA 6 52.007 182.564 77.815 1 41.95 ? C1' ATP 1605 H 1 HETATM 22 N N9 ATP . . . BA 6 53.032 181.796 78.513 1 40.94 ? N9 ATP 1605 H 1 HETATM 23 C C8 ATP . . . BA 6 54.198 181.314 77.978 1 44.54 ? C8 ATP 1605 H 1 HETATM 24 N N7 ATP . . . BA 6 54.946 180.654 78.827 1 45.61 ? N7 ATP 1605 H 1 HETATM 25 C C5 ATP . . . BA 6 54.221 180.704 80.008 1 41.67 ? C5 ATP 1605 H 1 HETATM 26 C C6 ATP . . . BA 6 54.467 180.189 81.295 1 43.71 ? C6 ATP 1605 H 1 HETATM 27 N N6 ATP . . . BA 6 55.561 179.493 81.619 1 50.22 ? N6 ATP 1605 H 1 HETATM 28 N N1 ATP . . . BA 6 53.538 180.418 82.252 1 44.62 ? N1 ATP 1605 H 1 HETATM 29 C C2 ATP . . . BA 6 52.443 181.114 81.935 1 46.54 ? C2 ATP 1605 H 1 HETATM 30 N N3 ATP . . . BA 6 52.105 181.646 80.757 1 46.02 ? N3 ATP 1605 H 1 HETATM 31 C C4 ATP . . . BA 6 53.04 181.406 79.831 1 41.85 ? C4 ATP 1605 H 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #