data_7W4P # _model_server_result.job_id jL0rmyrzWEBWD_nS7pGqhw _model_server_result.datetime_utc '2025-04-13 09:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1605}' # _entry.id 7W4P # _exptl.entry_id 7W4P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W4P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 T N N ? 6 Z N N ? 6 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B OE1 GLN 775 B GLN 775 1_555 K MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 B OD2 ASP 854 B ASP 854 1_555 K MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc3 J O2B ADP . B ADP 1601 1_555 L MG MG . B MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 J O3B ADP . B ADP 1601 1_555 L MG MG . B MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc5 K MG MG . B MG 1602 1_555 N O1B ATP . B ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 D OE1 GLN 775 D GLN 775 1_555 Q MG MG . D MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 D OD2 ASP 854 D ASP 854 1_555 Q MG MG . D MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc8 P O2B ADP . D ADP 1601 1_555 R MG MG . D MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc9 P O3B ADP . D ADP 1601 1_555 R MG MG . D MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc10 Q MG MG . D MG 1602 1_555 T O1B ATP . D ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc11 F OE1 GLN 775 F GLN 775 1_555 W MG MG . F MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 F OD2 ASP 854 F ASP 854 1_555 W MG MG . F MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc13 V O2B ADP . F ADP 1601 1_555 X MG MG . F MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc14 V O3B ADP . F ADP 1601 1_555 X MG MG . F MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc15 W MG MG . F MG 1602 1_555 Z O1B ATP . F ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 H OE1 GLN 775 H GLN 775 1_555 CA MG MG . H MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc17 H OD2 ASP 854 H ASP 854 1_555 CA MG MG . H MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc18 BA O2B ADP . H ADP 1601 1_555 DA MG MG . H MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc19 BA O3B ADP . H ADP 1601 1_555 DA MG MG . H MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc20 CA MG MG . H MG 1602 1_555 FA O1B ATP . H ATP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7W4P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ADP A 1 1001 1001 ADP ADP . J 3 ADP B 1 1601 2002 ADP ADP . K 4 MG B 1 1602 2003 MG MG . L 4 MG B 1 1603 2004 MG MG . M 5 E2H B 1 1604 2005 E2H LIG . N 6 ATP B 1 1605 3004 ATP ATP . O 3 ADP C 1 1001 1001 ADP ADP . P 3 ADP D 1 1601 2002 ADP ADP . Q 4 MG D 1 1602 2003 MG MG . R 4 MG D 1 1603 2004 MG MG . S 5 E2H D 1 1604 2005 E2H LIG . T 6 ATP D 1 1605 3004 ATP ATP . U 3 ADP E 1 1001 1001 ADP ADP . V 3 ADP F 1 1601 2002 ADP ADP . W 4 MG F 1 1602 2003 MG MG . X 4 MG F 1 1603 2004 MG MG . Y 5 E2H F 1 1604 2005 E2H LIG . Z 6 ATP F 1 1605 3004 ATP ATP . AA 3 ADP G 1 1001 1001 ADP ADP . BA 3 ADP H 1 1601 2002 ADP ADP . CA 4 MG H 1 1602 2003 MG MG . DA 4 MG H 1 1603 2004 MG MG . EA 5 E2H H 1 1604 2005 E2H LIG . FA 6 ATP H 1 1605 3004 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 6 69.768 48.196 70.628 1 44.65 ? PG ATP 1605 B 1 HETATM 2 O O1G ATP . . . N 6 70.193 48.368 69.211 1 45.71 ? O1G ATP 1605 B 1 HETATM 3 O O2G ATP . . . N 6 69.806 49.492 71.447 1 45.43 ? O2G ATP 1605 B 1 HETATM 4 O O3G ATP . . . N 6 68.39 47.548 70.78 1 47.91 ? O3G ATP 1605 B 1 HETATM 5 P PB ATP . . . N 6 72.3 46.802 71.414 1 41.72 ? PB ATP 1605 B 1 HETATM 6 O O1B ATP . . . N 6 73.167 47.994 71.464 1 42.4 ? O1B ATP 1605 B 1 HETATM 7 O O2B ATP . . . N 6 72.536 45.852 70.239 1 39.26 ? O2B ATP 1605 B 1 HETATM 8 O O3B ATP . . . N 6 70.762 47.208 71.393 1 42.89 ? O3B ATP 1605 B 1 HETATM 9 P PA ATP . . . N 6 73.501 45.34 73.696 1 49.06 ? PA ATP 1605 B 1 HETATM 10 O O1A ATP . . . N 6 73.826 46.26 74.804 1 40.91 ? O1A ATP 1605 B 1 HETATM 11 O O2A ATP . . . N 6 74.691 44.977 72.816 1 42.33 ? O2A ATP 1605 B 1 HETATM 12 O O3A ATP . . . N 6 72.371 45.931 72.745 1 44.53 ? O3A ATP 1605 B 1 HETATM 13 O O5' ATP . . . N 6 72.821 44.014 74.222 1 39.92 ? O5' ATP 1605 B 1 HETATM 14 C C5' ATP . . . N 6 73.302 42.711 73.827 1 37.71 ? C5' ATP 1605 B 1 HETATM 15 C C4' ATP . . . N 6 72.736 41.616 74.709 1 34.51 ? C4' ATP 1605 B 1 HETATM 16 O O4' ATP . . . N 6 73.357 41.648 76.01 1 38.72 ? O4' ATP 1605 B 1 HETATM 17 C C3' ATP . . . N 6 71.227 41.62 74.951 1 38.83 ? C3' ATP 1605 B 1 HETATM 18 O O3' ATP . . . N 6 70.699 40.299 74.923 1 35.4 ? O3' ATP 1605 B 1 HETATM 19 C C2' ATP . . . N 6 71.078 42.276 76.331 1 38.15 ? C2' ATP 1605 B 1 HETATM 20 O O2' ATP . . . N 6 70.011 41.698 77.075 1 40.16 ? O2' ATP 1605 B 1 HETATM 21 C C1' ATP . . . N 6 72.419 41.983 77.016 1 36.38 ? C1' ATP 1605 B 1 HETATM 22 N N9 ATP . . . N 6 72.953 43.118 77.762 1 38.45 ? N9 ATP 1605 B 1 HETATM 23 C C8 ATP . . . N 6 73.176 44.381 77.279 1 38.86 ? C8 ATP 1605 B 1 HETATM 24 N N7 ATP . . . N 6 73.67 45.214 78.161 1 35.41 ? N7 ATP 1605 B 1 HETATM 25 C C5 ATP . . . N 6 73.783 44.445 79.309 1 40.55 ? C5 ATP 1605 B 1 HETATM 26 C C6 ATP . . . N 6 74.243 44.738 80.606 1 25.13 ? C6 ATP 1605 B 1 HETATM 27 N N6 ATP . . . N 6 74.695 45.94 80.979 1 42.31 ? N6 ATP 1605 B 1 HETATM 28 N N1 ATP . . . N 6 74.223 43.741 81.522 1 39.92 ? N1 ATP 1605 B 1 HETATM 29 C C2 ATP . . . N 6 73.772 42.539 81.155 1 38.16 ? C2 ATP 1605 B 1 HETATM 30 N N3 ATP . . . N 6 73.315 42.146 79.963 1 36.59 ? N3 ATP 1605 B 1 HETATM 31 C C4 ATP . . . N 6 73.345 43.149 79.078 1 39.48 ? C4 ATP 1605 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #