data_7W5M # _model_server_result.job_id b-fXwY4TOnnu2BdVeWeymg _model_server_result.datetime_utc '2024-12-26 23:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7W5M # _exptl.entry_id 7W5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W5M _cell.length_a 51.278 _cell.length_b 62.803 _cell.length_c 92.796 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7W5M _atom_sites.fract_transf_matrix[1][1] 0.019502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 401 GOL GOL . D 4 PG4 A 1 402 501 PG4 PG4 . E 4 PG4 A 1 403 601 PG4 PG4 . F 5 SO4 A 1 404 9 SO4 SO4 . G 5 SO4 A 1 405 11 SO4 SO4 . H 5 SO4 B 1 201 10 SO4 SO4 . I 6 HOH A 1 501 64 HOH HOH . I 6 HOH A 2 502 30 HOH HOH . I 6 HOH A 3 503 62 HOH HOH . I 6 HOH A 4 504 50 HOH HOH . I 6 HOH A 5 505 18 HOH HOH . I 6 HOH A 6 506 37 HOH HOH . I 6 HOH A 7 507 36 HOH HOH . I 6 HOH A 8 508 15 HOH HOH . I 6 HOH A 9 509 40 HOH HOH . I 6 HOH A 10 510 2 HOH HOH . I 6 HOH A 11 511 49 HOH HOH . I 6 HOH A 12 512 8 HOH HOH . I 6 HOH A 13 513 5 HOH HOH . I 6 HOH A 14 514 52 HOH HOH . I 6 HOH A 15 515 12 HOH HOH . I 6 HOH A 16 516 14 HOH HOH . I 6 HOH A 17 517 35 HOH HOH . I 6 HOH A 18 518 3 HOH HOH . I 6 HOH A 19 519 54 HOH HOH . I 6 HOH A 20 520 21 HOH HOH . I 6 HOH A 21 521 44 HOH HOH . I 6 HOH A 22 522 55 HOH HOH . I 6 HOH A 23 523 61 HOH HOH . I 6 HOH A 24 524 23 HOH HOH . I 6 HOH A 25 525 17 HOH HOH . I 6 HOH A 26 526 28 HOH HOH . I 6 HOH A 27 527 16 HOH HOH . I 6 HOH A 28 528 9 HOH HOH . I 6 HOH A 29 529 43 HOH HOH . I 6 HOH A 30 530 33 HOH HOH . I 6 HOH A 31 531 48 HOH HOH . I 6 HOH A 32 532 24 HOH HOH . I 6 HOH A 33 533 27 HOH HOH . I 6 HOH A 34 534 47 HOH HOH . I 6 HOH A 35 535 42 HOH HOH . I 6 HOH A 36 536 63 HOH HOH . I 6 HOH A 37 537 1 HOH HOH . I 6 HOH A 38 538 66 HOH HOH . I 6 HOH A 39 539 22 HOH HOH . I 6 HOH A 40 540 20 HOH HOH . I 6 HOH A 41 541 7 HOH HOH . I 6 HOH A 42 542 65 HOH HOH . I 6 HOH A 43 543 11 HOH HOH . I 6 HOH A 44 544 4 HOH HOH . I 6 HOH A 45 545 45 HOH HOH . I 6 HOH A 46 546 29 HOH HOH . I 6 HOH A 47 547 10 HOH HOH . I 6 HOH A 48 548 53 HOH HOH . I 6 HOH A 49 549 59 HOH HOH . I 6 HOH A 50 550 25 HOH HOH . I 6 HOH A 51 551 46 HOH HOH . I 6 HOH A 52 552 26 HOH HOH . I 6 HOH A 53 553 38 HOH HOH . I 6 HOH A 54 554 57 HOH HOH . I 6 HOH A 55 555 51 HOH HOH . I 6 HOH A 56 556 32 HOH HOH . I 6 HOH A 57 557 19 HOH HOH . J 6 HOH B 1 301 39 HOH HOH . J 6 HOH B 2 302 6 HOH HOH . J 6 HOH B 3 303 31 HOH HOH . J 6 HOH B 4 304 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 17.981 11.466 28.614 1 47.86 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 17.319 12.529 29.272 1 52.89 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 17.991 11.825 27.115 1 52.32 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 18.511 13.106 26.863 1 57.91 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 18.789 10.716 26.44 1 45.31 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 18.969 11.143 25.121 1 46.71 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #