data_7W5O
#
_model_server_result.job_id            SsP3n1XQl3LxZYI0-fcAcw 
_model_server_result.datetime_utc      '2024-12-11 07:46:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w5o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7W5O 
#
_exptl.entry_id    7W5O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7W5O 
_cell.length_a            82.812 
_cell.length_b            82.812 
_cell.length_c            274.44 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W5O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 132 A ASP 124 1_555 A N NEP 133 A NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C NEP 133 A NEP 125 1_555 A N ILE 134 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 B C ASP 132 B ASP 124 1_555 B N NEP 133 B NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 B C NEP 133 B NEP 125 1_555 B N ILE 134 B ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 370 n n 
C1 O1B MLA doub 371 n n 
C1 C2 MLA sing 372 n n 
O1A H1A MLA sing 373 n n 
C2 C3 MLA sing 374 n n 
C2 HC21 MLA sing 375 n n 
C2 HC22 MLA sing 376 n n 
C3 O3A MLA doub 377 n n 
C3 O3B MLA sing 378 n n 
O3B H3B MLA sing 379 n n 
#
_atom_sites.entry_id                     7W5O 
_atom_sites.fract_transf_matrix[1][1]    0.012076 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5ID A 1 401 401 5ID 5ID . 
D 3 MLA A 1 402 501 MLA MLA . 
E 4 SIN A 1 403 701 SIN SIN . 
F 5 NA A 1 404 901 NA NA . 
G 4 SIN A 1 405 1001 SIN SIN . 
H 3 MLA A 1 406 1101 MLA MLA . 
I 3 MLA A 1 407 1201 MLA MLA . 
J 6 EPE A 1 408 1301 EPE EPE . 
K 3 MLA B 1 601 601 MLA MLA . 
L 7 TAR B 1 602 801 TAR TAR . 
M 3 MLA B 1 603 1001 MLA MLA . 
N 3 MLA B 1 604 1101 MLA MLA . 
O 6 EPE B 1 605 1201 EPE EPE . 
P 8 6GI B 1 606 1301 6GI HT3 . 
Q 9 HOH A 1 501 71 HOH HOH . 
Q 9 HOH A 2 502 98 HOH HOH . 
Q 9 HOH A 3 503 88 HOH HOH . 
Q 9 HOH A 4 504 95 HOH HOH . 
Q 9 HOH A 5 505 26 HOH HOH . 
Q 9 HOH A 6 506 19 HOH HOH . 
Q 9 HOH A 7 507 2 HOH HOH . 
Q 9 HOH A 8 508 28 HOH HOH . 
Q 9 HOH A 9 509 18 HOH HOH . 
Q 9 HOH A 10 510 84 HOH HOH . 
Q 9 HOH A 11 511 24 HOH HOH . 
Q 9 HOH A 12 512 92 HOH HOH . 
Q 9 HOH A 13 513 110 HOH HOH . 
Q 9 HOH A 14 514 29 HOH HOH . 
Q 9 HOH A 15 515 15 HOH HOH . 
Q 9 HOH A 16 516 17 HOH HOH . 
Q 9 HOH A 17 517 5 HOH HOH . 
Q 9 HOH A 18 518 11 HOH HOH . 
Q 9 HOH A 19 519 9 HOH HOH . 
Q 9 HOH A 20 520 3 HOH HOH . 
Q 9 HOH A 21 521 25 HOH HOH . 
Q 9 HOH A 22 522 70 HOH HOH . 
Q 9 HOH A 23 523 66 HOH HOH . 
Q 9 HOH A 24 524 41 HOH HOH . 
Q 9 HOH A 25 525 30 HOH HOH . 
Q 9 HOH A 26 526 115 HOH HOH . 
Q 9 HOH A 27 527 56 HOH HOH . 
Q 9 HOH A 28 528 22 HOH HOH . 
Q 9 HOH A 29 529 6 HOH HOH . 
Q 9 HOH A 30 530 52 HOH HOH . 
Q 9 HOH A 31 531 114 HOH HOH . 
Q 9 HOH A 32 532 4 HOH HOH . 
Q 9 HOH A 33 533 16 HOH HOH . 
Q 9 HOH A 34 534 34 HOH HOH . 
Q 9 HOH A 35 535 53 HOH HOH . 
Q 9 HOH A 36 536 31 HOH HOH . 
Q 9 HOH A 37 537 1 HOH HOH . 
Q 9 HOH A 38 538 36 HOH HOH . 
Q 9 HOH A 39 539 8 HOH HOH . 
Q 9 HOH A 40 540 39 HOH HOH . 
Q 9 HOH A 41 541 118 HOH HOH . 
Q 9 HOH A 42 542 58 HOH HOH . 
Q 9 HOH A 43 543 94 HOH HOH . 
Q 9 HOH A 44 544 27 HOH HOH . 
Q 9 HOH A 45 545 99 HOH HOH . 
Q 9 HOH A 46 546 101 HOH HOH . 
Q 9 HOH A 47 547 112 HOH HOH . 
Q 9 HOH A 48 548 85 HOH HOH . 
Q 9 HOH A 49 549 57 HOH HOH . 
Q 9 HOH A 50 550 87 HOH HOH . 
Q 9 HOH A 51 551 91 HOH HOH . 
Q 9 HOH A 52 552 45 HOH HOH . 
Q 9 HOH A 53 553 48 HOH HOH . 
Q 9 HOH A 54 554 67 HOH HOH . 
Q 9 HOH A 55 555 32 HOH HOH . 
Q 9 HOH A 56 556 47 HOH HOH . 
Q 9 HOH A 57 557 43 HOH HOH . 
Q 9 HOH A 58 558 93 HOH HOH . 
Q 9 HOH A 59 559 100 HOH HOH . 
Q 9 HOH A 60 560 86 HOH HOH . 
Q 9 HOH A 61 561 50 HOH HOH . 
Q 9 HOH A 62 562 97 HOH HOH . 
Q 9 HOH A 63 563 83 HOH HOH . 
Q 9 HOH A 64 564 37 HOH HOH . 
Q 9 HOH A 65 565 33 HOH HOH . 
Q 9 HOH A 66 566 89 HOH HOH . 
Q 9 HOH A 67 567 44 HOH HOH . 
Q 9 HOH A 68 568 23 HOH HOH . 
Q 9 HOH A 69 569 103 HOH HOH . 
Q 9 HOH A 70 570 7 HOH HOH . 
Q 9 HOH A 71 571 96 HOH HOH . 
R 9 HOH B 1 701 68 HOH HOH . 
R 9 HOH B 2 702 119 HOH HOH . 
R 9 HOH B 3 703 72 HOH HOH . 
R 9 HOH B 4 704 49 HOH HOH . 
R 9 HOH B 5 705 80 HOH HOH . 
R 9 HOH B 6 706 61 HOH HOH . 
R 9 HOH B 7 707 38 HOH HOH . 
R 9 HOH B 8 708 54 HOH HOH . 
R 9 HOH B 9 709 12 HOH HOH . 
R 9 HOH B 10 710 64 HOH HOH . 
R 9 HOH B 11 711 14 HOH HOH . 
R 9 HOH B 12 712 76 HOH HOH . 
R 9 HOH B 13 713 63 HOH HOH . 
R 9 HOH B 14 714 20 HOH HOH . 
R 9 HOH B 15 715 77 HOH HOH . 
R 9 HOH B 16 716 10 HOH HOH . 
R 9 HOH B 17 717 113 HOH HOH . 
R 9 HOH B 18 718 21 HOH HOH . 
R 9 HOH B 19 719 78 HOH HOH . 
R 9 HOH B 20 720 107 HOH HOH . 
R 9 HOH B 21 721 62 HOH HOH . 
R 9 HOH B 22 722 65 HOH HOH . 
R 9 HOH B 23 723 55 HOH HOH . 
R 9 HOH B 24 724 106 HOH HOH . 
R 9 HOH B 25 725 74 HOH HOH . 
R 9 HOH B 26 726 81 HOH HOH . 
R 9 HOH B 27 727 46 HOH HOH . 
R 9 HOH B 28 728 111 HOH HOH . 
R 9 HOH B 29 729 51 HOH HOH . 
R 9 HOH B 30 730 79 HOH HOH . 
R 9 HOH B 31 731 13 HOH HOH . 
R 9 HOH B 32 732 104 HOH HOH . 
R 9 HOH B 33 733 59 HOH HOH . 
R 9 HOH B 34 734 90 HOH HOH . 
R 9 HOH B 35 735 82 HOH HOH . 
R 9 HOH B 36 736 60 HOH HOH . 
R 9 HOH B 37 737 75 HOH HOH . 
R 9 HOH B 38 738 105 HOH HOH . 
R 9 HOH B 39 739 69 HOH HOH . 
R 9 HOH B 40 740 102 HOH HOH . 
R 9 HOH B 41 741 117 HOH HOH . 
R 9 HOH B 42 742 73 HOH HOH . 
R 9 HOH B 43 743 108 HOH HOH . 
R 9 HOH B 44 744 42 HOH HOH . 
R 9 HOH B 45 745 116 HOH HOH . 
R 9 HOH B 46 746 109 HOH HOH . 
R 9 HOH B 47 747 35 HOH HOH . 
R 9 HOH B 48 748 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . D 3 6.976 -43.151 -42.037 1 71.24 ? C1 MLA 402 A 1 
HETATM 2 O O1A MLA . . . D 3 8.042 -43.067 -41.42 1 71.62 ? O1A MLA 402 A 1 
HETATM 3 O O1B MLA . . . D 3 6.684 -44.228 -42.698 1 82.68 ? O1B MLA 402 A 1 
HETATM 4 C C2 MLA . . . D 3 5.855 -42.043 -41.978 1 63.63 ? C2 MLA 402 A 1 
HETATM 5 C C3 MLA . . . D 3 4.764 -42.391 -42.991 1 78.28 ? C3 MLA 402 A 1 
HETATM 6 O O3A MLA . . . D 3 4.666 -41.843 -44.096 1 72 ? O3A MLA 402 A 1 
HETATM 7 O O3B MLA . . . D 3 3.925 -43.294 -42.598 1 80.92 ? O3B MLA 402 A 1 
HETATM 8 H HC21 MLA . . . D 3 6.277 -41.065 -42.235 1 76.35 ? HC21 MLA 402 A 1 
HETATM 9 H HC22 MLA . . . D 3 5.41 -42.009 -40.977 1 76.35 ? HC22 MLA 402 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#