data_7W5R # _model_server_result.job_id F0Zya37vU4SEfQzjY9PXNA _model_server_result.datetime_utc '2025-07-31 07:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1001}' # _entry.id 7W5R # _exptl.entry_id 7W5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 119.986 _cell.angle_beta 90.061 _cell.angle_gamma 90.015 _cell.entry_id 7W5R _cell.length_a 40.556 _cell.length_b 82.513 _cell.length_c 82.573 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 117 E LYS 117 1_555 L O3' GDP . E GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? covale ? covale2 D N SER 17 I SER 17 1_555 N O1B GDP . I GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale3 F NZ LYS 117 Q LYS 117 1_555 R O3' GDP . Q GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 I MG MG . A MG 1001 1_555 J O1B GDP . A GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 I MG MG . A MG 1001 1_555 J O2B GDP . A GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc3 I MG MG . A MG 1001 1_555 J O3A GDP . A GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc4 B OG SER 17 E SER 17 1_555 K MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 K MG MG . E MG 1001 1_555 L O3B GDP . E GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc6 K MG MG . E MG 1001 1_555 L O2B GDP . E GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 D OG SER 17 I SER 17 1_555 M MG MG . I MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc8 M MG MG . I MG 1001 1_555 N O2B GDP . I GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc9 E OG SER 17 M SER 17 1_555 O MG MG . M MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc10 E OD1 ASP 57 M ASP 57 1_555 O MG MG . M MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc11 E OD2 ASP 57 M ASP 57 1_555 O MG MG . M MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 O MG MG . M MG 1001 1_555 P O3B GDP . M GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc13 F OG SER 17 Q SER 17 1_555 Q MG MG . Q MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc14 Q MG MG . Q MG 1001 1_555 R O2B GDP . Q GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc15 G OG SER 17 U SER 17 1_555 S MG MG . U MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 S MG MG . U MG 1001 1_555 T O2B GDP . U GDP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W5R _atom_sites.fract_transf_matrix[1][1] 0.024657 _atom_sites.fract_transf_matrix[1][2] 0.000006 _atom_sites.fract_transf_matrix[1][3] 0.000034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012119 _atom_sites.fract_transf_matrix[2][3] 0.006993 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG A 1 1001 1001 MG MG . J 4 GDP A 1 1002 1002 GDP GDP . K 3 MG E 1 1001 1001 MG MG . L 4 GDP E 1 1002 1002 GDP GDP . M 3 MG I 1 1001 1001 MG MG . N 4 GDP I 1 1002 1002 GDP GDP . O 3 MG M 1 1001 1001 MG MG . P 4 GDP M 1 1002 1002 GDP GDP . Q 3 MG Q 1 1001 1001 MG MG . R 4 GDP Q 1 1002 1002 GDP GDP . S 3 MG U 1 1001 1001 MG MG . T 4 GDP U 1 1002 1002 GDP GDP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.472 _atom_site.Cartn_y -31.253 _atom_site.Cartn_z 9.81 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #