data_7W6I # _model_server_result.job_id HsK1KOifr4gtItuSOGxAuQ _model_server_result.datetime_utc '2024-11-22 22:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4001}' # _entry.id 7W6I # _exptl.entry_id 7W6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.51 _cell.angle_gamma 90 _cell.entry_id 7W6I _cell.length_a 75.777 _cell.length_b 44.422 _cell.length_c 120.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C THR 3 B THR 3 1_555 D N MLZ 4 B MLZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 D C MLZ 4 B MLZ 4 1_555 D N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 B SG CYS 99 C CYS 3910 1_555 F ZN ZN . C ZN 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 B SG CYS 147 C CYS 3958 1_555 F ZN ZN . C ZN 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 B SG CYS 149 C CYS 3960 1_555 F ZN ZN . C ZN 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 B SG CYS 154 C CYS 3965 1_555 F ZN ZN . C ZN 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 303 n n N HN1 SAH sing 304 n n N HN2 SAH sing 305 n n CA CB SAH sing 306 n n CA C SAH sing 307 n n CA HA SAH sing 308 n n CB CG SAH sing 309 n n CB HB1 SAH sing 310 n n CB HB2 SAH sing 311 n n CG SD SAH sing 312 n n CG HG1 SAH sing 313 n n CG HG2 SAH sing 314 n n SD C5' SAH sing 315 n n C O SAH doub 316 n n C OXT SAH sing 317 n n OXT HXT SAH sing 318 n n C5' C4' SAH sing 319 n n C5' "H5'1" SAH sing 320 n n C5' "H5'2" SAH sing 321 n n C4' O4' SAH sing 322 n n C4' C3' SAH sing 323 n n C4' H4' SAH sing 324 n n O4' C1' SAH sing 325 n n C3' O3' SAH sing 326 n n C3' C2' SAH sing 327 n n C3' H3' SAH sing 328 n n O3' HO3' SAH sing 329 n n C2' O2' SAH sing 330 n n C2' C1' SAH sing 331 n n C2' H2' SAH sing 332 n n O2' HO2' SAH sing 333 n n C1' N9 SAH sing 334 n n C1' H1' SAH sing 335 n n N9 C8 SAH sing 336 n y N9 C4 SAH sing 337 n y C8 N7 SAH doub 338 n y C8 H8 SAH sing 339 n n N7 C5 SAH sing 340 n y C5 C6 SAH sing 341 n y C5 C4 SAH doub 342 n y C6 N6 SAH sing 343 n n C6 N1 SAH doub 344 n y N6 HN61 SAH sing 345 n n N6 HN62 SAH sing 346 n n N1 C2 SAH sing 347 n y C2 N3 SAH doub 348 n y C2 H2 SAH sing 349 n n N3 C4 SAH sing 350 n y # _atom_sites.entry_id 7W6I _atom_sites.fract_transf_matrix[1][1] 0.013197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004164 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SAH C 1 4001 4001 SAH SAH . F 6 ZN C 1 4002 4002 ZN ZN . G 7 HOH A 1 601 6 HOH HOH . G 7 HOH A 2 602 30 HOH HOH . G 7 HOH A 3 603 15 HOH HOH . G 7 HOH A 4 604 2 HOH HOH . G 7 HOH A 5 605 35 HOH HOH . G 7 HOH A 6 606 38 HOH HOH . G 7 HOH A 7 607 17 HOH HOH . G 7 HOH A 8 608 32 HOH HOH . G 7 HOH A 9 609 26 HOH HOH . G 7 HOH A 10 610 8 HOH HOH . G 7 HOH A 11 611 37 HOH HOH . G 7 HOH A 12 612 4 HOH HOH . G 7 HOH A 13 613 12 HOH HOH . G 7 HOH A 14 614 23 HOH HOH . G 7 HOH A 15 615 40 HOH HOH . G 7 HOH A 16 616 19 HOH HOH . G 7 HOH A 17 617 13 HOH HOH . G 7 HOH A 18 618 46 HOH HOH . G 7 HOH A 19 619 10 HOH HOH . G 7 HOH A 20 620 20 HOH HOH . G 7 HOH A 21 621 39 HOH HOH . G 7 HOH A 22 622 33 HOH HOH . G 7 HOH A 23 623 24 HOH HOH . G 7 HOH A 24 624 18 HOH HOH . G 7 HOH A 25 625 27 HOH HOH . G 7 HOH A 26 626 42 HOH HOH . G 7 HOH A 27 627 34 HOH HOH . G 7 HOH A 28 628 41 HOH HOH . H 7 HOH C 1 4101 31 HOH HOH . H 7 HOH C 2 4102 1 HOH HOH . H 7 HOH C 3 4103 28 HOH HOH . H 7 HOH C 4 4104 11 HOH HOH . H 7 HOH C 5 4105 21 HOH HOH . H 7 HOH C 6 4106 36 HOH HOH . H 7 HOH C 7 4107 22 HOH HOH . H 7 HOH C 8 4108 16 HOH HOH . H 7 HOH C 9 4109 7 HOH HOH . H 7 HOH C 10 4110 47 HOH HOH . H 7 HOH C 11 4111 43 HOH HOH . H 7 HOH C 12 4112 44 HOH HOH . I 7 HOH F 1 401 25 HOH HOH . I 7 HOH F 2 402 3 HOH HOH . I 7 HOH F 3 403 29 HOH HOH . I 7 HOH F 4 404 45 HOH HOH . I 7 HOH F 5 405 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 5 88.888 2.623 6.32 1 61.19 ? N SAH 4001 C 1 HETATM 2 C CA SAH . . . E 5 89.304 2.02 7.582 1 64.4 ? CA SAH 4001 C 1 HETATM 3 C CB SAH . . . E 5 88.944 2.933 8.746 1 58.65 ? CB SAH 4001 C 1 HETATM 4 C CG SAH . . . E 5 89.954 4.039 9.028 1 59.11 ? CG SAH 4001 C 1 HETATM 5 S SD SAH . . . E 5 91.365 3.418 9.978 1 66.09 ? SD SAH 4001 C 1 HETATM 6 C C SAH . . . E 5 88.678 0.642 7.78 1 65.78 ? C SAH 4001 C 1 HETATM 7 O O SAH . . . E 5 88.094 0.077 6.856 1 68.35 ? O SAH 4001 C 1 HETATM 8 O OXT SAH . . . E 5 88.746 0.059 8.863 1 56.36 ? OXT SAH 4001 C 1 HETATM 9 C C5' SAH . . . E 5 92.52 4.331 8.923 1 63.77 ? C5' SAH 4001 C 1 HETATM 10 C C4' SAH . . . E 5 93.138 3.471 7.828 1 63.84 ? C4' SAH 4001 C 1 HETATM 11 O O4' SAH . . . E 5 92.326 3.513 6.666 1 65.93 ? O4' SAH 4001 C 1 HETATM 12 C C3' SAH . . . E 5 94.524 3.965 7.439 1 65.3 ? C3' SAH 4001 C 1 HETATM 13 O O3' SAH . . . E 5 95.528 3.145 7.987 1 71.33 ? O3' SAH 4001 C 1 HETATM 14 C C2' SAH . . . E 5 94.561 3.885 5.93 1 73.14 ? C2' SAH 4001 C 1 HETATM 15 O O2' SAH . . . E 5 95.303 2.761 5.517 1 74.79 ? O2' SAH 4001 C 1 HETATM 16 C C1' SAH . . . E 5 93.116 3.713 5.509 1 65.41 ? C1' SAH 4001 C 1 HETATM 17 N N9 SAH . . . E 5 92.709 4.96 4.844 1 62.97 ? N9 SAH 4001 C 1 HETATM 18 C C8 SAH . . . E 5 92.199 6.072 5.46 1 57.78 ? C8 SAH 4001 C 1 HETATM 19 N N7 SAH . . . E 5 91.965 7.013 4.519 1 59.95 ? N7 SAH 4001 C 1 HETATM 20 C C5 SAH . . . E 5 92.332 6.519 3.315 1 60.98 ? C5 SAH 4001 C 1 HETATM 21 C C6 SAH . . . E 5 92.308 7.058 2.037 1 58.03 ? C6 SAH 4001 C 1 HETATM 22 N N6 SAH . . . E 5 91.856 8.293 1.837 1 58.9 ? N6 SAH 4001 C 1 HETATM 23 N N1 SAH . . . E 5 92.755 6.301 0.976 1 62.92 ? N1 SAH 4001 C 1 HETATM 24 C C2 SAH . . . E 5 93.224 5.021 1.184 1 61.45 ? C2 SAH 4001 C 1 HETATM 25 N N3 SAH . . . E 5 93.246 4.493 2.458 1 63.58 ? N3 SAH 4001 C 1 HETATM 26 C C4 SAH . . . E 5 92.804 5.229 3.505 1 62.97 ? C4 SAH 4001 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #