data_7W6Z # _model_server_result.job_id WToUHmgNfSaqn_0zxUPVrA _model_server_result.datetime_utc '2024-11-14 18:46:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7W6Z # _exptl.entry_id 7W6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.613 _cell.angle_gamma 90 _cell.entry_id 7W6Z _cell.length_a 46.27 _cell.length_b 40.8 _cell.length_c 160.24 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PRO 105 A PRO 105 1_555 A N MSE 106 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C MSE 106 A MSE 106 1_555 A N ALA 107 A ALA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C TYR 120 A TYR 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 121 A MSE 121 1_555 A N MSE 122 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 122 A MSE 122 1_555 A N GLY 123 A GLY 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C VAL 329 A VAL 329 1_555 A N MSE 330 A MSE 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 330 A MSE 330 1_555 A N VAL 331 A VAL 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C GLY 368 A GLY 368 1_555 A N MSE 369 A MSE 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 369 A MSE 369 1_555 A N VAL 370 A VAL 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C ALA 377 A ALA 377 1_555 A N MSE 378 A MSE 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 378 A MSE 378 1_555 A N ILE 379 A ILE 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C PRO 392 A PRO 392 1_555 A N MSE 393 A MSE 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 393 A MSE 393 1_555 A N LEU 394 A LEU 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C LEU 399 A LEU 399 1_555 A N MSE 400 A MSE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 400 A MSE 400 1_555 A N TYR 401 A TYR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C ILE 431 A ILE 431 1_555 A N MSE 432 A MSE 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 A C MSE 432 A MSE 432 1_555 A N ALA 433 A ALA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A NE2 HIS 22 A HIS 22 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 26 A HIS 26 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A OD1 ASP 395 A ASP 395 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 A OD2 ASP 395 A ASP 395 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc5 B ZN ZN . A ZN 501 1_555 C N1 BAT . A BAT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 B ZN ZN . A ZN 501 1_555 C O1 BAT . A BAT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 B ZN ZN . A ZN 501 1_555 C O2 BAT . A BAT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C23 H31 N3 O4 S2' _chem_comp.formula_weight 477.64 _chem_comp.id BAT _chem_comp.mon_nstd_flag . _chem_comp.name 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BATIMASTAT;BB94 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BAT sing 70 n n C1 C3 BAT sing 71 n n C1 C8 BAT sing 72 n n C1 H1 BAT sing 73 n n C2 N1 BAT sing 74 n n C2 O1 BAT doub 75 n n C3 S1 BAT sing 76 n n C3 H31 BAT sing 77 n n C3 H32 BAT sing 78 n n C4 C5 BAT doub 79 n y C4 S1 BAT sing 80 n n C4 S2 BAT sing 81 n y C5 C6 BAT sing 82 n y C5 H5 BAT sing 83 n n C6 C7 BAT doub 84 n y C6 H6 BAT sing 85 n n C7 S2 BAT sing 86 n y C7 H7 BAT sing 87 n n C8 C9 BAT sing 88 n n C8 C13 BAT sing 89 n n C8 H8 BAT sing 90 n n C9 C10 BAT sing 91 n n C9 H91 BAT sing 92 n n C9 H92 BAT sing 93 n n C10 C11 BAT sing 94 n n C10 C12 BAT sing 95 n n C10 H10 BAT sing 96 n n C11 H111 BAT sing 97 n n C11 H112 BAT sing 98 n n C11 H113 BAT sing 99 n n C12 H121 BAT sing 100 n n C12 H122 BAT sing 101 n n C12 H123 BAT sing 102 n n C13 N2 BAT sing 103 n n C13 O3 BAT doub 104 n n C14 C15 BAT sing 105 n n C14 C17 BAT sing 106 n n C14 N2 BAT sing 107 n n C14 H14 BAT sing 108 n n C15 N3 BAT sing 109 n n C15 O4 BAT doub 110 n n C16 N3 BAT sing 111 n n C16 H161 BAT sing 112 n n C16 H162 BAT sing 113 n n C16 H163 BAT sing 114 n n C17 C18 BAT sing 115 n n C17 H171 BAT sing 116 n n C17 H172 BAT sing 117 n n C18 C19 BAT doub 118 n y C18 C23 BAT sing 119 n y C19 C20 BAT sing 120 n y C19 H19 BAT sing 121 n n C20 C21 BAT doub 122 n y C20 H20 BAT sing 123 n n C21 C22 BAT sing 124 n y C21 H21 BAT sing 125 n n C22 C23 BAT doub 126 n y C22 H22 BAT sing 127 n n C23 H23 BAT sing 128 n n N1 O2 BAT sing 129 n n N1 HN1 BAT sing 130 n n N2 HN2 BAT sing 131 n n N3 HN3 BAT sing 132 n n O2 HO2 BAT sing 133 n n # _atom_sites.entry_id 7W6Z _atom_sites.fract_transf_matrix[1][1] 0.021612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 BAT A 1 502 502 BAT BAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BAT . . . C 3 12.264 15.436 21.015 1 100.09 ? C1 BAT 502 A 1 HETATM 2 C C2 BAT . . . C 3 10.774 15.357 20.685 1 96.02 ? C2 BAT 502 A 1 HETATM 3 C C3 BAT . . . C 3 12.793 16.826 20.673 1 105.15 ? C3 BAT 502 A 1 HETATM 4 C C4 BAT . . . C 3 15.056 16.321 18.844 1 114.55 ? C4 BAT 502 A 1 HETATM 5 C C5 BAT . . . C 3 15.996 16.315 19.97 1 110.52 ? C5 BAT 502 A 1 HETATM 6 C C6 BAT . . . C 3 17.351 15.794 19.525 1 115.64 ? C6 BAT 502 A 1 HETATM 7 C C7 BAT . . . C 3 17.324 15.464 18.167 1 116.18 ? C7 BAT 502 A 1 HETATM 8 C C8 BAT . . . C 3 12.452 15.156 22.504 1 102.03 ? C8 BAT 502 A 1 HETATM 9 C C9 BAT . . . C 3 12.135 13.686 22.766 1 104.31 ? C9 BAT 502 A 1 HETATM 10 C C10 BAT . . . C 3 12.214 13.398 24.262 1 98.04 ? C10 BAT 502 A 1 HETATM 11 C C11 BAT . . . C 3 11.04 14.073 24.968 1 100.32 ? C11 BAT 502 A 1 HETATM 12 C C12 BAT . . . C 3 12.126 11.89 24.481 1 94.88 ? C12 BAT 502 A 1 HETATM 13 C C13 BAT . . . C 3 13.888 15.453 22.938 1 102.23 ? C13 BAT 502 A 1 HETATM 14 C C14 BAT . . . C 3 15.493 16.809 24.338 1 107.33 ? C14 BAT 502 A 1 HETATM 15 C C15 BAT . . . C 3 15.702 16.155 25.703 1 102.54 ? C15 BAT 502 A 1 HETATM 16 C C16 BAT . . . C 3 16.944 14.553 27.185 1 101.63 ? C16 BAT 502 A 1 HETATM 17 C C17 BAT . . . C 3 15.667 18.328 24.408 1 111.21 ? C17 BAT 502 A 1 HETATM 18 C C18 BAT . . . C 3 16.614 18.755 25.53 1 111.31 ? C18 BAT 502 A 1 HETATM 19 C C19 BAT . . . C 3 16.134 19.364 26.595 1 109.85 ? C19 BAT 502 A 1 HETATM 20 C C20 BAT . . . C 3 17.071 19.797 27.72 1 108.74 ? C20 BAT 502 A 1 HETATM 21 C C21 BAT . . . C 3 18.364 19.567 27.623 1 111.63 ? C21 BAT 502 A 1 HETATM 22 C C22 BAT . . . C 3 18.924 18.867 26.387 1 111.25 ? C22 BAT 502 A 1 HETATM 23 C C23 BAT . . . C 3 18.115 18.492 25.417 1 107.8 ? C23 BAT 502 A 1 HETATM 24 N N1 BAT . . . C 3 10.278 14.282 19.848 1 98.14 ? N1 BAT 502 A 1 HETATM 25 N N2 BAT . . . C 3 14.141 16.509 23.9 1 104.54 ? N2 BAT 502 A 1 HETATM 26 N N3 BAT . . . C 3 16.756 15.174 25.887 1 93.14 ? N3 BAT 502 A 1 HETATM 27 O O1 BAT . . . C 3 10.021 16.166 21.115 1 89.08 ? O1 BAT 502 A 1 HETATM 28 O O2 BAT . . . C 3 8.909 14.208 19.547 1 96.33 ? O2 BAT 502 A 1 HETATM 29 O O3 BAT . . . C 3 14.788 14.821 22.496 1 101.24 ? O3 BAT 502 A 1 HETATM 30 O O4 BAT . . . C 3 14.997 16.438 26.613 1 98.74 ? O4 BAT 502 A 1 HETATM 31 S S1 BAT . . . C 3 13.328 16.867 18.94 1 116.31 ? S1 BAT 502 A 1 HETATM 32 S S2 BAT . . . C 3 15.833 15.727 17.406 1 122.4 ? S2 BAT 502 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 801 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #