data_7W74 # _model_server_result.job_id ss3Y4Ugm_rw2nGgfIREAag _model_server_result.datetime_utc '2025-03-05 01:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 7W74 # _exptl.entry_id 7W74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W74 _cell.length_a 65.565 _cell.length_b 65.565 _cell.length_c 219.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 210 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B NZ LYS 210 B LYS 210 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 405 n n C1 C6 RET sing 406 n n C1 C16 RET sing 407 n n C1 C17 RET sing 408 n n C2 C3 RET sing 409 n n C2 H21 RET sing 410 n n C2 H22 RET sing 411 n n C3 C4 RET sing 412 n n C3 H31 RET sing 413 n n C3 H32 RET sing 414 n n C4 C5 RET sing 415 n n C4 H41 RET sing 416 n n C4 H42 RET sing 417 n n C5 C6 RET doub 418 n n C5 C18 RET sing 419 n n C6 C7 RET sing 420 n n C7 C8 RET doub 421 e n C7 H7 RET sing 422 n n C8 C9 RET sing 423 n n C8 H8 RET sing 424 n n C9 C10 RET doub 425 e n C9 C19 RET sing 426 n n C10 C11 RET sing 427 n n C10 H10 RET sing 428 n n C11 C12 RET doub 429 e n C11 H11 RET sing 430 n n C12 C13 RET sing 431 n n C12 H12 RET sing 432 n n C13 C14 RET doub 433 e n C13 C20 RET sing 434 n n C14 C15 RET sing 435 n n C14 H14 RET sing 436 n n C15 O1 RET doub 437 n n C15 H15 RET sing 438 n n C16 H161 RET sing 439 n n C16 H162 RET sing 440 n n C16 H163 RET sing 441 n n C17 H171 RET sing 442 n n C17 H172 RET sing 443 n n C17 H173 RET sing 444 n n C18 H181 RET sing 445 n n C18 H182 RET sing 446 n n C18 H183 RET sing 447 n n C19 H191 RET sing 448 n n C19 H192 RET sing 449 n n C19 H193 RET sing 450 n n C20 H201 RET sing 451 n n C20 H202 RET sing 452 n n C20 H203 RET sing 453 n n # _atom_sites.entry_id 7W74 _atom_sites.fract_transf_matrix[1][1] 0.015252 _atom_sites.fract_transf_matrix[1][2] 0.008806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 OLB A 1 302 3 OLB OLB . E 4 OLC A 1 303 1 OLC OLC . F 4 OLC A 1 304 2 OLC OLC . G 4 OLC A 1 305 4 OLC OLC . H 4 OLC A 1 306 5 OLC OLC . I 2 RET B 1 301 302 RET RET . J 3 OLB B 1 302 5 OLB OLB . K 4 OLC B 1 303 3 OLC OLC . L 5 HOH A 1 401 10 HOH HOH . L 5 HOH A 2 402 15 HOH HOH . L 5 HOH A 3 403 4 HOH HOH . L 5 HOH A 4 404 16 HOH HOH . L 5 HOH A 5 405 8 HOH HOH . L 5 HOH A 6 406 5 HOH HOH . L 5 HOH A 7 407 9 HOH HOH . L 5 HOH A 8 408 6 HOH HOH . L 5 HOH A 9 409 14 HOH HOH . M 5 HOH B 1 401 13 HOH HOH . M 5 HOH B 2 402 17 HOH HOH . M 5 HOH B 3 403 12 HOH HOH . M 5 HOH B 4 404 1 HOH HOH . M 5 HOH B 5 405 3 HOH HOH . M 5 HOH B 6 406 7 HOH HOH . M 5 HOH B 7 407 11 HOH HOH . M 5 HOH B 8 408 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . I 2 -0.727 19.512 43.295 1 40.78 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . I 2 0.326 19.288 42.206 1 42.47 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . I 2 0.832 17.902 42.173 1 40.67 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . I 2 1.524 17.61 43.495 1 37.71 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . I 2 0.755 18.086 44.695 1 42.16 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . I 2 -0.366 18.835 44.613 1 42.66 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . I 2 -1.191 18.973 45.807 1 42.1 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . I 2 -2.387 19.621 45.951 1 45.19 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . I 2 -3.199 19.688 47.084 1 44.53 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . I 2 -4.39 20.435 47.075 1 43.66 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . I 2 -5.338 20.591 48.067 1 44.57 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . I 2 -6.496 21.336 47.962 1 46.49 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . I 2 -7.511 21.522 48.912 1 49.51 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . I 2 -8.587 22.376 48.681 1 49.41 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . I 2 -9.673 22.626 49.591 1 52.82 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . I 2 -0.864 21.034 43.468 1 40.13 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . I 2 -2.051 18.96 42.743 1 40.2 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . I 2 1.355 17.616 45.991 1 37.38 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . I 2 -2.84 18.973 48.335 1 43.14 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . I 2 -7.402 20.768 50.186 1 47.97 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #