data_7W74 # _model_server_result.job_id vmKhrL0g8i--KMRTIlA1Bw _model_server_result.datetime_utc '2025-03-05 01:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 7W74 # _exptl.entry_id 7W74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W74 _cell.length_a 65.565 _cell.length_b 65.565 _cell.length_c 219.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 210 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B NZ LYS 210 B LYS 210 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 301 n n C10 C9 OLC doub 302 n n C10 C11 OLC sing 303 n n C9 C8 OLC sing 304 n n C17 C16 OLC sing 305 z n C11 C12 OLC sing 306 n n C8 C7 OLC sing 307 n n C24 C22 OLC sing 308 n n C24 O25 OLC sing 309 n n C16 C15 OLC sing 310 n n C12 C13 OLC sing 311 n n C7 C6 OLC sing 312 n n C15 C14 OLC sing 313 n n C13 C14 OLC sing 314 n n C6 C5 OLC sing 315 n n C5 C4 OLC sing 316 n n C4 C3 OLC sing 317 n n C3 C2 OLC sing 318 n n C2 C1 OLC sing 319 n n C21 C22 OLC sing 320 n n C21 O20 OLC sing 321 n n C1 O19 OLC doub 322 n n C1 O20 OLC sing 323 n n C22 O23 OLC sing 324 n n C18 H18 OLC sing 325 n n C18 H18A OLC sing 326 n n C18 H18B OLC sing 327 n n C10 H10 OLC sing 328 n n C9 H9 OLC sing 329 n n C17 H17 OLC sing 330 n n C17 H17A OLC sing 331 n n C11 H11 OLC sing 332 n n C11 H11A OLC sing 333 n n C8 H8 OLC sing 334 n n C8 H8A OLC sing 335 n n C24 H24 OLC sing 336 n n C24 H24A OLC sing 337 n n C16 H16 OLC sing 338 n n C16 H16A OLC sing 339 n n C12 H12 OLC sing 340 n n C12 H12A OLC sing 341 n n C7 H7 OLC sing 342 n n C7 H7A OLC sing 343 n n C15 H15 OLC sing 344 n n C15 H15A OLC sing 345 n n C13 H13 OLC sing 346 n n C13 H13A OLC sing 347 n n C6 H6 OLC sing 348 n n C6 H6A OLC sing 349 n n C14 H14 OLC sing 350 n n C14 H14A OLC sing 351 n n C5 H5 OLC sing 352 n n C5 H5A OLC sing 353 n n C4 H4 OLC sing 354 n n C4 H4A OLC sing 355 n n C3 H3 OLC sing 356 n n C3 H3A OLC sing 357 n n C2 H2 OLC sing 358 n n C2 H2A OLC sing 359 n n C21 H21 OLC sing 360 n n C21 H21A OLC sing 361 n n C22 H22 OLC sing 362 n n O25 HO25 OLC sing 363 n n O23 HO23 OLC sing 364 n n # _atom_sites.entry_id 7W74 _atom_sites.fract_transf_matrix[1][1] 0.015252 _atom_sites.fract_transf_matrix[1][2] 0.008806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 OLB A 1 302 3 OLB OLB . E 4 OLC A 1 303 1 OLC OLC . F 4 OLC A 1 304 2 OLC OLC . G 4 OLC A 1 305 4 OLC OLC . H 4 OLC A 1 306 5 OLC OLC . I 2 RET B 1 301 302 RET RET . J 3 OLB B 1 302 5 OLB OLB . K 4 OLC B 1 303 3 OLC OLC . L 5 HOH A 1 401 10 HOH HOH . L 5 HOH A 2 402 15 HOH HOH . L 5 HOH A 3 403 4 HOH HOH . L 5 HOH A 4 404 16 HOH HOH . L 5 HOH A 5 405 8 HOH HOH . L 5 HOH A 6 406 5 HOH HOH . L 5 HOH A 7 407 9 HOH HOH . L 5 HOH A 8 408 6 HOH HOH . L 5 HOH A 9 409 14 HOH HOH . M 5 HOH B 1 401 13 HOH HOH . M 5 HOH B 2 402 17 HOH HOH . M 5 HOH B 3 403 12 HOH HOH . M 5 HOH B 4 404 1 HOH HOH . M 5 HOH B 5 405 3 HOH HOH . M 5 HOH B 6 406 7 HOH HOH . M 5 HOH B 7 407 11 HOH HOH . M 5 HOH B 8 408 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 4 -5.123 2.106 -4.706 1 37.99 ? C18 OLC 303 A 1 HETATM 2 C C10 OLC . . . E 4 -2.351 4.292 4.788 1 56.95 ? C10 OLC 303 A 1 HETATM 3 C C9 OLC . . . E 4 -1.413 4.253 5.708 1 57.69 ? C9 OLC 303 A 1 HETATM 4 C C17 OLC . . . E 4 -4.627 1.628 -3.36 1 45.06 ? C17 OLC 303 A 1 HETATM 5 C C11 OLC . . . E 4 -2.617 3.246 3.748 1 52.22 ? C11 OLC 303 A 1 HETATM 6 C C8 OLC . . . E 4 -1.24 5.219 6.843 1 55.16 ? C8 OLC 303 A 1 HETATM 7 C C24 OLC . . . E 4 -3.659 3.288 18.506 1 45.52 ? C24 OLC 303 A 1 HETATM 8 C C16 OLC . . . E 4 -4.18 2.724 -2.422 1 47.45 ? C16 OLC 303 A 1 HETATM 9 C C12 OLC . . . E 4 -2.687 3.775 2.345 1 50.52 ? C12 OLC 303 A 1 HETATM 10 C C7 OLC . . . E 4 -0.542 4.624 8.032 1 53.71 ? C7 OLC 303 A 1 HETATM 11 C C15 OLC . . . E 4 -3.704 2.203 -1.085 1 51.99 ? C15 OLC 303 A 1 HETATM 12 C C13 OLC . . . E 4 -3.021 2.723 1.298 1 50.18 ? C13 OLC 303 A 1 HETATM 13 C C6 OLC . . . E 4 -0.488 5.527 9.26 1 53.48 ? C6 OLC 303 A 1 HETATM 14 C C14 OLC . . . E 4 -3.315 3.267 -0.083 1 46.44 ? C14 OLC 303 A 1 HETATM 15 C C5 OLC . . . E 4 -1.839 5.966 9.783 1 49.19 ? C5 OLC 303 A 1 HETATM 16 C C4 OLC . . . E 4 -1.777 6.811 11.039 1 51.77 ? C4 OLC 303 A 1 HETATM 17 C C3 OLC . . . E 4 -1.665 6.021 12.333 1 50.17 ? C3 OLC 303 A 1 HETATM 18 C C2 OLC . . . E 4 -3.003 5.652 12.903 1 51.23 ? C2 OLC 303 A 1 HETATM 19 C C21 OLC . . . E 4 -3.361 3.738 16.04 1 47.61 ? C21 OLC 303 A 1 HETATM 20 C C1 OLC . . . E 4 -2.949 4.489 13.858 1 63.94 ? C1 OLC 303 A 1 HETATM 21 C C22 OLC . . . E 4 -3.979 4.2 17.34 1 45.43 ? C22 OLC 303 A 1 HETATM 22 O O19 OLC . . . E 4 -2.506 3.404 13.588 1 71.28 ? O19 OLC 303 A 1 HETATM 23 O O25 OLC . . . E 4 -4.103 3.841 19.742 1 49.81 ? O25 OLC 303 A 1 HETATM 24 O O23 OLC . . . E 4 -3.568 5.535 17.627 1 53.64 ? O23 OLC 303 A 1 HETATM 25 O O20 OLC . . . E 4 -3.467 4.783 15.047 1 59.17 ? O20 OLC 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #