data_7W74 # _model_server_result.job_id '_mRnw26T0LYq50X-_aqBrg' _model_server_result.datetime_utc '2025-03-05 01:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7W74 # _exptl.entry_id 7W74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W74 _cell.length_a 65.565 _cell.length_b 65.565 _cell.length_c 219.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 210 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B NZ LYS 210 B LYS 210 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 301 n n C10 C9 OLC doub 302 n n C10 C11 OLC sing 303 n n C9 C8 OLC sing 304 n n C17 C16 OLC sing 305 z n C11 C12 OLC sing 306 n n C8 C7 OLC sing 307 n n C24 C22 OLC sing 308 n n C24 O25 OLC sing 309 n n C16 C15 OLC sing 310 n n C12 C13 OLC sing 311 n n C7 C6 OLC sing 312 n n C15 C14 OLC sing 313 n n C13 C14 OLC sing 314 n n C6 C5 OLC sing 315 n n C5 C4 OLC sing 316 n n C4 C3 OLC sing 317 n n C3 C2 OLC sing 318 n n C2 C1 OLC sing 319 n n C21 C22 OLC sing 320 n n C21 O20 OLC sing 321 n n C1 O19 OLC doub 322 n n C1 O20 OLC sing 323 n n C22 O23 OLC sing 324 n n C18 H18 OLC sing 325 n n C18 H18A OLC sing 326 n n C18 H18B OLC sing 327 n n C10 H10 OLC sing 328 n n C9 H9 OLC sing 329 n n C17 H17 OLC sing 330 n n C17 H17A OLC sing 331 n n C11 H11 OLC sing 332 n n C11 H11A OLC sing 333 n n C8 H8 OLC sing 334 n n C8 H8A OLC sing 335 n n C24 H24 OLC sing 336 n n C24 H24A OLC sing 337 n n C16 H16 OLC sing 338 n n C16 H16A OLC sing 339 n n C12 H12 OLC sing 340 n n C12 H12A OLC sing 341 n n C7 H7 OLC sing 342 n n C7 H7A OLC sing 343 n n C15 H15 OLC sing 344 n n C15 H15A OLC sing 345 n n C13 H13 OLC sing 346 n n C13 H13A OLC sing 347 n n C6 H6 OLC sing 348 n n C6 H6A OLC sing 349 n n C14 H14 OLC sing 350 n n C14 H14A OLC sing 351 n n C5 H5 OLC sing 352 n n C5 H5A OLC sing 353 n n C4 H4 OLC sing 354 n n C4 H4A OLC sing 355 n n C3 H3 OLC sing 356 n n C3 H3A OLC sing 357 n n C2 H2 OLC sing 358 n n C2 H2A OLC sing 359 n n C21 H21 OLC sing 360 n n C21 H21A OLC sing 361 n n C22 H22 OLC sing 362 n n O25 HO25 OLC sing 363 n n O23 HO23 OLC sing 364 n n # _atom_sites.entry_id 7W74 _atom_sites.fract_transf_matrix[1][1] 0.015252 _atom_sites.fract_transf_matrix[1][2] 0.008806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 OLB A 1 302 3 OLB OLB . E 4 OLC A 1 303 1 OLC OLC . F 4 OLC A 1 304 2 OLC OLC . G 4 OLC A 1 305 4 OLC OLC . H 4 OLC A 1 306 5 OLC OLC . I 2 RET B 1 301 302 RET RET . J 3 OLB B 1 302 5 OLB OLB . K 4 OLC B 1 303 3 OLC OLC . L 5 HOH A 1 401 10 HOH HOH . L 5 HOH A 2 402 15 HOH HOH . L 5 HOH A 3 403 4 HOH HOH . L 5 HOH A 4 404 16 HOH HOH . L 5 HOH A 5 405 8 HOH HOH . L 5 HOH A 6 406 5 HOH HOH . L 5 HOH A 7 407 9 HOH HOH . L 5 HOH A 8 408 6 HOH HOH . L 5 HOH A 9 409 14 HOH HOH . M 5 HOH B 1 401 13 HOH HOH . M 5 HOH B 2 402 17 HOH HOH . M 5 HOH B 3 403 12 HOH HOH . M 5 HOH B 4 404 1 HOH HOH . M 5 HOH B 5 405 3 HOH HOH . M 5 HOH B 6 406 7 HOH HOH . M 5 HOH B 7 407 11 HOH HOH . M 5 HOH B 8 408 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 4 -32.77 3.923 -3.832 1 61.73 ? C18 OLC 305 A 1 HETATM 2 C C10 OLC . . . G 4 -33.027 5.634 4.89 1 62.48 ? C10 OLC 305 A 1 HETATM 3 C C9 OLC . . . G 4 -32.928 4.621 5.709 1 57.26 ? C9 OLC 305 A 1 HETATM 4 C C17 OLC . . . G 4 -32.151 3.234 -2.636 1 66.08 ? C17 OLC 305 A 1 HETATM 5 C C11 OLC . . . G 4 -33.296 5.57 3.42 1 59.7 ? C11 OLC 305 A 1 HETATM 6 C C8 OLC . . . G 4 -32.177 4.744 6.995 1 52.62 ? C8 OLC 305 A 1 HETATM 7 C C24 OLC . . . G 4 -33.89 -0.264 18.051 1 59.05 ? C24 OLC 305 A 1 HETATM 8 C C16 OLC . . . G 4 -31.773 4.199 -1.539 1 69.83 ? C16 OLC 305 A 1 HETATM 9 C C12 OLC . . . G 4 -32.267 4.76 2.697 1 56.55 ? C12 OLC 305 A 1 HETATM 10 C C7 OLC . . . G 4 -33.047 4.656 8.202 1 55.86 ? C7 OLC 305 A 1 HETATM 11 C C15 OLC . . . G 4 -31.098 3.58 -0.336 1 63.93 ? C15 OLC 305 A 1 HETATM 12 C C13 OLC . . . G 4 -31.867 5.316 1.344 1 61.25 ? C13 OLC 305 A 1 HETATM 13 C C6 OLC . . . G 4 -32.35 5.09 9.484 1 55.07 ? C6 OLC 305 A 1 HETATM 14 C C14 OLC . . . G 4 -30.704 4.592 0.71 1 58.19 ? C14 OLC 305 A 1 HETATM 15 C C5 OLC . . . G 4 -33.113 4.785 10.744 1 54.41 ? C5 OLC 305 A 1 HETATM 16 C C4 OLC . . . G 4 -32.487 5.373 11.98 1 55.35 ? C4 OLC 305 A 1 HETATM 17 C C3 OLC . . . G 4 -33.061 4.864 13.283 1 53.23 ? C3 OLC 305 A 1 HETATM 18 C C2 OLC . . . G 4 -32.894 3.39 13.416 1 50.87 ? C2 OLC 305 A 1 HETATM 19 C C21 OLC . . . G 4 -33.979 0.846 15.783 1 59.15 ? C21 OLC 305 A 1 HETATM 20 C C1 OLC . . . G 4 -33.257 2.859 14.772 1 57.02 ? C1 OLC 305 A 1 HETATM 21 C C22 OLC . . . G 4 -33.136 0.518 16.995 1 61.48 ? C22 OLC 305 A 1 HETATM 22 O O19 OLC . . . G 4 -33.576 3.532 15.719 1 51.31 ? O19 OLC 305 A 1 HETATM 23 O O25 OLC . . . G 4 -33.952 0.437 19.291 1 51.96 ? O25 OLC 305 A 1 HETATM 24 O O23 OLC . . . G 4 -31.99 -0.22 16.574 1 56.89 ? O23 OLC 305 A 1 HETATM 25 O O20 OLC . . . G 4 -33.174 1.531 14.798 1 62.99 ? O20 OLC 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 528 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #