data_7W77
#
_model_server_result.job_id            GD_9WJOQu9-h15XXMqF-6w 
_model_server_result.datetime_utc      '2024-11-21 13:54:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2001}' 
#
_entry.id    7W77 
#
_exptl.entry_id    7W77 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7W77 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
4 oligosaccharide 
5 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n D NAG 1 E 1 NAG E 1 NAG 
4 n D NAG 2 E 2 NAG E 2 NAG 
4 n D BMA 3 E 3 BMA E 3 BMA 
5 n E NAG 1 F 1 NAG F 1 NAG 
5 n E NAG 2 F 2 NAG F 2 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 40 B CYS 40 1_555 A SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 50 C CYS 50 1_555 B SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 C SG CYS 911 D CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 72 C CYS 72 1_555 B SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 C SG CYS 277 D CYS 277 1_555 C SG CYS 337 D CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 C SG CYS 913 D CYS 913 1_555 C SG CYS 919 D CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 C SG CYS 951 D CYS 951 1_555 C SG CYS 960 D CYS 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 C SG CYS 1364 D CYS 1364 1_555 C SG CYS 1384 D CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
covale ? covale1 A ND2 ASN 93 B ASN 93 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 A ND2 ASN 110 B ASN 110 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 A ND2 ASN 114 B ASN 114 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 A ND2 ASN 135 B ASN 135 1_555 I C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 C ND2 ASN 339 D ASN 339 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 C ND2 ASN 1366 D ASN 1366 1_555 J C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 C ND2 ASN 1380 D ASN 1380 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 D O4 NAG . E NAG 2 1_555 D C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale10 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 583 n n 
C1 O1 NAG sing 584 n n 
C1 O5 NAG sing 585 n n 
C1 H1 NAG sing 586 n n 
C2 C3 NAG sing 587 n n 
C2 N2 NAG sing 588 n n 
C2 H2 NAG sing 589 n n 
C3 C4 NAG sing 590 n n 
C3 O3 NAG sing 591 n n 
C3 H3 NAG sing 592 n n 
C4 C5 NAG sing 593 n n 
C4 O4 NAG sing 594 n n 
C4 H4 NAG sing 595 n n 
C5 C6 NAG sing 596 n n 
C5 O5 NAG sing 597 n n 
C5 H5 NAG sing 598 n n 
C6 O6 NAG sing 599 n n 
C6 H61 NAG sing 600 n n 
C6 H62 NAG sing 601 n n 
C7 C8 NAG sing 602 n n 
C7 N2 NAG sing 603 n n 
C7 O7 NAG doub 604 n n 
C8 H81 NAG sing 605 n n 
C8 H82 NAG sing 606 n n 
C8 H83 NAG sing 607 n n 
N2 HN2 NAG sing 608 n n 
O1 HO1 NAG sing 609 n n 
O3 HO3 NAG sing 610 n n 
O4 HO4 NAG sing 611 n n 
O6 HO6 NAG sing 612 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7W77 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG B 1 301 301 NAG NAG . 
G 6 NAG B 1 302 302 NAG NAG . 
H 6 NAG B 1 303 303 NAG NAG . 
I 6 NAG B 1 304 304 NAG NAG . 
J 6 NAG D 1 2001 1 NAG NAG . 
K 7 9Z9 D 1 2002 1801 9Z9 9Z9 . 
L 7 9Z9 D 1 2003 1901 9Z9 9Z9 . 
M 8 6OU D 1 2004 3001 6OU 6OU . 
N 8 6OU D 1 2005 3002 6OU 6OU . 
O 8 6OU D 1 2006 3003 6OU 6OU . 
P 8 6OU D 1 2007 3004 6OU 6OU . 
Q 8 6OU D 1 2008 3005 6OU 6OU . 
R 8 6OU D 1 2009 3006 6OU 6OU . 
S 8 6OU D 1 2010 3007 6OU 6OU . 
T 8 6OU D 1 2011 3008 6OU 6OU . 
U 8 6OU D 1 2012 3009 6OU 6OU . 
V 7 9Z9 D 1 2013 3010 9Z9 9Z9 . 
W 8 6OU D 1 2014 3011 6OU 6OU . 
X 8 6OU D 1 2015 3012 6OU 6OU . 
Y 8 6OU D 1 2016 3013 6OU 6OU . 
Z 8 6OU D 1 2017 3014 6OU 6OU . 
AA 8 6OU D 1 2018 3015 6OU 6OU . 
BA 8 6OU D 1 2019 3016 6OU 6OU . 
CA 8 6OU D 1 2020 3017 6OU 6OU . 
DA 9 966 D 1 2021 3101 966 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 6 151.953 132.549 167.513 1 44.19 ? C1 NAG 2001 D 1 
HETATM 2 C C2 NAG . . . J 6 153.284 132.858 168.203 1 44.19 ? C2 NAG 2001 D 1 
HETATM 3 C C3 NAG . . . J 6 153.06 133.124 169.69 1 44.19 ? C3 NAG 2001 D 1 
HETATM 4 C C4 NAG . . . J 6 152.006 134.205 169.887 1 44.19 ? C4 NAG 2001 D 1 
HETATM 5 C C5 NAG . . . J 6 150.729 133.836 169.14 1 44.19 ? C5 NAG 2001 D 1 
HETATM 6 C C6 NAG . . . J 6 149.679 134.922 169.193 1 44.19 ? C6 NAG 2001 D 1 
HETATM 7 C C7 NAG . . . J 6 155.559 131.952 168.028 1 44.19 ? C7 NAG 2001 D 1 
HETATM 8 C C8 NAG . . . J 6 156.39 130.721 167.827 1 44.19 ? C8 NAG 2001 D 1 
HETATM 9 N N2 NAG . . . J 6 154.234 131.773 168.018 1 44.19 ? N2 NAG 2001 D 1 
HETATM 10 O O3 NAG . . . J 6 154.285 133.527 170.292 1 44.19 ? O3 NAG 2001 D 1 
HETATM 11 O O4 NAG . . . J 6 151.713 134.353 171.272 1 44.19 ? O4 NAG 2001 D 1 
HETATM 12 O O5 NAG . . . J 6 151.024 133.616 167.753 1 44.19 ? O5 NAG 2001 D 1 
HETATM 13 O O6 NAG . . . J 6 149.557 135.587 167.943 1 44.19 ? O6 NAG 2001 D 1 
HETATM 14 O O7 NAG . . . J 6 156.064 133.058 168.194 1 44.19 ? O7 NAG 2001 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#