data_7W77 # _model_server_result.job_id -iyUMLZDsKUIvn_vjZzghg _model_server_result.datetime_utc '2024-11-21 14:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2013}' # _entry.id 7W77 # _exptl.entry_id 7W77 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W77 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 1 NAG 4 n D NAG 2 E 2 NAG E 2 NAG 4 n D BMA 3 E 3 BMA E 3 BMA 5 n E NAG 1 F 1 NAG F 1 NAG 5 n E NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 B CYS 40 1_555 A SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 50 C CYS 50 1_555 B SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 C SG CYS 911 D CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 72 C CYS 72 1_555 B SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 277 D CYS 277 1_555 C SG CYS 337 D CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 C SG CYS 913 D CYS 913 1_555 C SG CYS 919 D CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 951 D CYS 951 1_555 C SG CYS 960 D CYS 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 1364 D CYS 1364 1_555 C SG CYS 1384 D CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale1 A ND2 ASN 93 B ASN 93 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 110 B ASN 110 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 114 B ASN 114 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 A ND2 ASN 135 B ASN 135 1_555 I C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 C ND2 ASN 339 D ASN 339 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 1366 D ASN 1366 1_555 J C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C ND2 ASN 1380 D ASN 1380 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 D O4 NAG . E NAG 2 1_555 D C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 225 n n O25 C24 9Z9 sing 226 n n C50 O49 9Z9 sing 227 n n O49 C48 9Z9 sing 228 n n C24 C23 9Z9 sing 229 n n C48 C23 9Z9 sing 230 n n C23 C22 9Z9 sing 231 n n C22 C21 9Z9 sing 232 n n C21 O20 9Z9 sing 233 n n O20 C17 9Z9 sing 234 n n C17 C18 9Z9 sing 235 n n C17 C16 9Z9 sing 236 n n C18 C19 9Z9 sing 237 n n C16 C13 9Z9 sing 238 n n C19 C11 9Z9 sing 239 n n C13 C11 9Z9 sing 240 n n C13 C14 9Z9 doub 241 n n C11 C12 9Z9 sing 242 n n C11 C08 9Z9 sing 243 n n C14 C15 9Z9 sing 244 n n C08 C09 9Z9 sing 245 n n C08 C07 9Z9 sing 246 n n C15 C07 9Z9 sing 247 n n C09 C10 9Z9 sing 248 n n C07 C06 9Z9 sing 249 n n C10 C02 9Z9 sing 250 n n C06 C02 9Z9 sing 251 n n C06 C05 9Z9 sing 252 n n C02 C01 9Z9 sing 253 n n C02 C03 9Z9 sing 254 n n C05 C04 9Z9 sing 255 n n C03 C04 9Z9 sing 256 n n C03 C74 9Z9 sing 257 n n C04 O72 9Z9 sing 258 n n C74 C75 9Z9 sing 259 n n C74 C73 9Z9 sing 260 n n O72 C73 9Z9 sing 261 n n C73 O80 9Z9 sing 262 n n C73 C76 9Z9 sing 263 n n O80 C79 9Z9 sing 264 n n C76 C77 9Z9 sing 265 n n C79 C78 9Z9 sing 266 n n C77 C78 9Z9 sing 267 n n C78 C81 9Z9 sing 268 n n C01 H1 9Z9 sing 269 n n C01 H2 9Z9 sing 270 n n C01 H3 9Z9 sing 271 n n C03 H4 9Z9 sing 272 n n C04 H5 9Z9 sing 273 n n C05 H6 9Z9 sing 274 n n C05 H7 9Z9 sing 275 n n C06 H8 9Z9 sing 276 n n C07 H9 9Z9 sing 277 n n C08 H10 9Z9 sing 278 n n C09 H11 9Z9 sing 279 n n C09 H12 9Z9 sing 280 n n C10 H13 9Z9 sing 281 n n C10 H14 9Z9 sing 282 n n C12 H15 9Z9 sing 283 n n C12 H16 9Z9 sing 284 n n C12 H17 9Z9 sing 285 n n C14 H18 9Z9 sing 286 n n C15 H19 9Z9 sing 287 n n C15 H20 9Z9 sing 288 n n C16 H21 9Z9 sing 289 n n C16 H22 9Z9 sing 290 n n C17 H23 9Z9 sing 291 n n C18 H24 9Z9 sing 292 n n C18 H25 9Z9 sing 293 n n C19 H26 9Z9 sing 294 n n C19 H27 9Z9 sing 295 n n C21 H28 9Z9 sing 296 n n C21 H29 9Z9 sing 297 n n C22 H30 9Z9 sing 298 n n C22 H31 9Z9 sing 299 n n C23 H32 9Z9 sing 300 n n C24 H33 9Z9 sing 301 n n C24 H34 9Z9 sing 302 n n C26 H35 9Z9 sing 303 n n C26 H36 9Z9 sing 304 n n C26 H37 9Z9 sing 305 n n C48 H38 9Z9 sing 306 n n C48 H39 9Z9 sing 307 n n C50 H40 9Z9 sing 308 n n C50 H41 9Z9 sing 309 n n C50 H42 9Z9 sing 310 n n C74 H43 9Z9 sing 311 n n C75 H44 9Z9 sing 312 n n C75 H45 9Z9 sing 313 n n C75 H46 9Z9 sing 314 n n C76 H47 9Z9 sing 315 n n C76 H48 9Z9 sing 316 n n C77 H49 9Z9 sing 317 n n C77 H50 9Z9 sing 318 n n C78 H51 9Z9 sing 319 n n C79 H52 9Z9 sing 320 n n C79 H53 9Z9 sing 321 n n C81 H54 9Z9 sing 322 n n C81 H55 9Z9 sing 323 n n C81 H56 9Z9 sing 324 n n # _atom_sites.entry_id 7W77 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 6 NAG B 1 304 304 NAG NAG . J 6 NAG D 1 2001 1 NAG NAG . K 7 9Z9 D 1 2002 1801 9Z9 9Z9 . L 7 9Z9 D 1 2003 1901 9Z9 9Z9 . M 8 6OU D 1 2004 3001 6OU 6OU . N 8 6OU D 1 2005 3002 6OU 6OU . O 8 6OU D 1 2006 3003 6OU 6OU . P 8 6OU D 1 2007 3004 6OU 6OU . Q 8 6OU D 1 2008 3005 6OU 6OU . R 8 6OU D 1 2009 3006 6OU 6OU . S 8 6OU D 1 2010 3007 6OU 6OU . T 8 6OU D 1 2011 3008 6OU 6OU . U 8 6OU D 1 2012 3009 6OU 6OU . V 7 9Z9 D 1 2013 3010 9Z9 9Z9 . W 8 6OU D 1 2014 3011 6OU 6OU . X 8 6OU D 1 2015 3012 6OU 6OU . Y 8 6OU D 1 2016 3013 6OU 6OU . Z 8 6OU D 1 2017 3014 6OU 6OU . AA 8 6OU D 1 2018 3015 6OU 6OU . BA 8 6OU D 1 2019 3016 6OU 6OU . CA 8 6OU D 1 2020 3017 6OU 6OU . DA 9 966 D 1 2021 3101 966 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . V 7 118.972 119.23 142.649 1 29.98 ? C01 9Z9 2013 D 1 HETATM 2 C C02 9Z9 . . . V 7 119.551 120.516 143.316 1 29.98 ? C02 9Z9 2013 D 1 HETATM 3 C C03 9Z9 . . . V 7 120.214 121.456 141.986 1 29.98 ? C03 9Z9 2013 D 1 HETATM 4 C C04 9Z9 . . . V 7 119.151 121.996 141.297 1 29.98 ? C04 9Z9 2013 D 1 HETATM 5 C C05 9Z9 . . . V 7 117.675 121.658 142.322 1 29.98 ? C05 9Z9 2013 D 1 HETATM 6 C C06 9Z9 . . . V 7 118.353 121.385 143.75 1 29.98 ? C06 9Z9 2013 D 1 HETATM 7 C C07 9Z9 . . . V 7 117.818 121.063 144.716 1 29.98 ? C07 9Z9 2013 D 1 HETATM 8 C C08 9Z9 . . . V 7 118.717 120.877 145.707 1 29.98 ? C08 9Z9 2013 D 1 HETATM 9 C C09 9Z9 . . . V 7 119.681 119.824 145.335 1 29.98 ? C09 9Z9 2013 D 1 HETATM 10 C C10 9Z9 . . . V 7 120.278 120.1 144.23 1 29.98 ? C10 9Z9 2013 D 1 HETATM 11 C C11 9Z9 . . . V 7 117.918 120.448 147.202 1 29.98 ? C11 9Z9 2013 D 1 HETATM 12 C C12 9Z9 . . . V 7 117.472 118.965 147.096 1 29.98 ? C12 9Z9 2013 D 1 HETATM 13 C C13 9Z9 . . . V 7 116.987 121.112 147.424 1 29.98 ? C13 9Z9 2013 D 1 HETATM 14 C C14 9Z9 . . . V 7 116.232 121.453 146.427 1 29.98 ? C14 9Z9 2013 D 1 HETATM 15 C C15 9Z9 . . . V 7 116.957 121.804 145.003 1 29.98 ? C15 9Z9 2013 D 1 HETATM 16 C C16 9Z9 . . . V 7 116.373 120.892 148.906 1 29.98 ? C16 9Z9 2013 D 1 HETATM 17 C C17 9Z9 . . . V 7 117.483 121.021 150.05 1 29.98 ? C17 9Z9 2013 D 1 HETATM 18 C C18 9Z9 . . . V 7 118.533 120.295 149.801 1 29.98 ? C18 9Z9 2013 D 1 HETATM 19 C C19 9Z9 . . . V 7 119.104 120.563 148.445 1 29.98 ? C19 9Z9 2013 D 1 HETATM 20 O O20 9Z9 . . . V 7 116.895 120.59 151.399 1 29.98 ? O20 9Z9 2013 D 1 HETATM 21 C C21 9Z9 . . . V 7 115.74 119.719 151.323 1 29.98 ? C21 9Z9 2013 D 1 HETATM 22 C C22 9Z9 . . . V 7 116.168 118.249 151.529 1 29.98 ? C22 9Z9 2013 D 1 HETATM 23 O O72 9Z9 . . . V 7 119.146 121.32 139.911 1 29.98 ? O72 9Z9 2013 D 1 HETATM 24 C C73 9Z9 . . . V 7 120.095 121.164 139.7 1 29.98 ? C73 9Z9 2013 D 1 HETATM 25 C C74 9Z9 . . . V 7 120.798 120.797 141.233 1 29.98 ? C74 9Z9 2013 D 1 HETATM 26 C C75 9Z9 . . . V 7 122.384 121.23 141.241 1 29.98 ? C75 9Z9 2013 D 1 HETATM 27 C C76 9Z9 . . . V 7 120.228 120.272 139.07 1 29.98 ? C76 9Z9 2013 D 1 HETATM 28 C C77 9Z9 . . . V 7 120.282 120.546 137.598 1 29.98 ? C77 9Z9 2013 D 1 HETATM 29 C C78 9Z9 . . . V 7 121.097 121.499 137.301 1 29.98 ? C78 9Z9 2013 D 1 HETATM 30 C C79 9Z9 . . . V 7 120.789 122.455 137.823 1 29.98 ? C79 9Z9 2013 D 1 HETATM 31 O O80 9Z9 . . . V 7 120.682 122.256 139.282 1 29.98 ? O80 9Z9 2013 D 1 HETATM 32 C C81 9Z9 . . . V 7 121.071 121.774 135.412 1 29.98 ? C81 9Z9 2013 D 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #