data_7W77 # _model_server_result.job_id T7i9i2YTML9iHmGOgYyr3g _model_server_result.datetime_utc '2024-11-21 14:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":2021}' # _entry.id 7W77 # _exptl.entry_id 7W77 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 627.765 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1S,2R,3R,4R,5R,6S,8R,9S,13S,16S,17R,18R)-11-ethyl-5-hydroxy-6,16,18-trimethoxy-4-(4-methoxybenzoyl)-13-(methoxymethyl)-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-8-yl] acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W77 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 1 NAG 4 n D NAG 2 E 2 NAG E 2 NAG 4 n D BMA 3 E 3 BMA E 3 BMA 5 n E NAG 1 F 1 NAG F 1 NAG 5 n E NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 B CYS 40 1_555 A SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 50 C CYS 50 1_555 B SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 C SG CYS 911 D CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 72 C CYS 72 1_555 B SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 277 D CYS 277 1_555 C SG CYS 337 D CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 C SG CYS 913 D CYS 913 1_555 C SG CYS 919 D CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 951 D CYS 951 1_555 C SG CYS 960 D CYS 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 1364 D CYS 1364 1_555 C SG CYS 1384 D CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale1 A ND2 ASN 93 B ASN 93 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 110 B ASN 110 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 114 B ASN 114 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 A ND2 ASN 135 B ASN 135 1_555 I C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 C ND2 ASN 339 D ASN 339 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 1366 D ASN 1366 1_555 J C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C ND2 ASN 1380 D ASN 1380 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 D O4 NAG . E NAG 2 1_555 D C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C35 H49 N O9' _chem_comp.formula_weight 627.765 _chem_comp.id 966 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1S,2R,3R,4R,5R,6S,8R,9S,13S,16S,17R,18R)-11-ethyl-5-hydroxy-6,16,18-trimethoxy-4-(4-methoxybenzoyl)-13-(methoxymethyl)-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-8-yl] acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bulleyaconitine A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 O06 966 sing 125 n n O06 C19 966 sing 126 n n C19 C09 966 sing 127 n n C09 C17 966 sing 128 n n C09 C15 966 sing 129 n n C09 C03 966 sing 130 n n C23 O02 966 sing 131 n n O02 C08 966 sing 132 n n C17 C18 966 sing 133 n n C08 C03 966 sing 134 n n C08 C05 966 sing 135 n n C15 N01 966 sing 136 n n C03 C01 966 sing 137 n n C24 C20 966 sing 138 n n C18 C10 966 sing 139 n n N01 C20 966 sing 140 n n N01 C04 966 sing 141 n n C05 C04 966 sing 142 n n C05 C07 966 sing 143 n n C01 C10 966 sing 144 n n C01 C04 966 sing 145 n n C01 C02 966 sing 146 n n O09 C34 966 sing 147 n n O09 C35 966 sing 148 n n C10 O03 966 sing 149 n n C32 C34 966 doub 150 n y C32 C30 966 sing 151 n y C34 C33 966 sing 152 n y C02 C06 966 sing 153 n n C02 C12 966 sing 154 n n O01 C22 966 sing 155 n n O01 C07 966 sing 156 n n C28 C22 966 sing 157 n n C22 O08 966 doub 158 n n C06 C07 966 sing 159 n n C06 C13 966 sing 160 n n C07 C14 966 sing 161 n n C30 C25 966 doub 162 n y C33 C31 966 doub 163 n y C25 C31 966 sing 164 n y C25 C21 966 sing 165 n n O03 C26 966 sing 166 n n C21 O07 966 doub 167 n n C21 C13 966 sing 168 n n C12 C11 966 sing 169 n n C13 C11 966 sing 170 n n C14 C16 966 sing 171 n n C11 C16 966 sing 172 n n C11 O04 966 sing 173 n n C16 O05 966 sing 174 n n O05 C27 966 sing 175 n n C10 H1 966 sing 176 n n C13 H2 966 sing 177 n n C15 H3 966 sing 178 n n C15 H4 966 sing 179 n n C17 H5 966 sing 180 n n C17 H6 966 sing 181 n n C20 H7 966 sing 182 n n C20 H8 966 sing 183 n n C24 H9 966 sing 184 n n C24 H10 966 sing 185 n n C24 H11 966 sing 186 n n C26 H12 966 sing 187 n n C26 H13 966 sing 188 n n C26 H14 966 sing 189 n n C28 H15 966 sing 190 n n C28 H16 966 sing 191 n n C28 H17 966 sing 192 n n C02 H18 966 sing 193 n n C03 H19 966 sing 194 n n C04 H20 966 sing 195 n n C05 H21 966 sing 196 n n C06 H22 966 sing 197 n n C08 H23 966 sing 198 n n C12 H24 966 sing 199 n n C12 H25 966 sing 200 n n C14 H26 966 sing 201 n n C14 H27 966 sing 202 n n C16 H28 966 sing 203 n n C18 H29 966 sing 204 n n C18 H30 966 sing 205 n n C19 H31 966 sing 206 n n C19 H32 966 sing 207 n n C23 H33 966 sing 208 n n C23 H34 966 sing 209 n n C23 H35 966 sing 210 n n C27 H36 966 sing 211 n n C27 H37 966 sing 212 n n C27 H38 966 sing 213 n n C29 H39 966 sing 214 n n C29 H40 966 sing 215 n n C29 H41 966 sing 216 n n C30 H42 966 sing 217 n n C31 H43 966 sing 218 n n C32 H44 966 sing 219 n n C33 H45 966 sing 220 n n C35 H46 966 sing 221 n n C35 H47 966 sing 222 n n C35 H48 966 sing 223 n n O04 H50 966 sing 224 n n # _atom_sites.entry_id 7W77 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 6 NAG B 1 304 304 NAG NAG . J 6 NAG D 1 2001 1 NAG NAG . K 7 9Z9 D 1 2002 1801 9Z9 9Z9 . L 7 9Z9 D 1 2003 1901 9Z9 9Z9 . M 8 6OU D 1 2004 3001 6OU 6OU . N 8 6OU D 1 2005 3002 6OU 6OU . O 8 6OU D 1 2006 3003 6OU 6OU . P 8 6OU D 1 2007 3004 6OU 6OU . Q 8 6OU D 1 2008 3005 6OU 6OU . R 8 6OU D 1 2009 3006 6OU 6OU . S 8 6OU D 1 2010 3007 6OU 6OU . T 8 6OU D 1 2011 3008 6OU 6OU . U 8 6OU D 1 2012 3009 6OU 6OU . V 7 9Z9 D 1 2013 3010 9Z9 9Z9 . W 8 6OU D 1 2014 3011 6OU 6OU . X 8 6OU D 1 2015 3012 6OU 6OU . Y 8 6OU D 1 2016 3013 6OU 6OU . Z 8 6OU D 1 2017 3014 6OU 6OU . AA 8 6OU D 1 2018 3015 6OU 6OU . BA 8 6OU D 1 2019 3016 6OU 6OU . CA 8 6OU D 1 2020 3017 6OU 6OU . DA 9 966 D 1 2021 3101 966 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 966 . . . DA 9 136.628 137.728 131.081 1 20.5 ? C10 966 2021 D 1 HETATM 2 C C13 966 . . . DA 9 132.59 139.994 133.042 1 20.5 ? C13 966 2021 D 1 HETATM 3 C C15 966 . . . DA 9 135.246 135.185 129.144 1 20.5 ? C15 966 2021 D 1 HETATM 4 C C17 966 . . . DA 9 137.075 136.933 128.684 1 20.5 ? C17 966 2021 D 1 HETATM 5 C C20 966 . . . DA 9 133.52 134.209 130.59 1 20.5 ? C20 966 2021 D 1 HETATM 6 C C21 966 . . . DA 9 132.563 141.474 132.8 1 20.5 ? C21 966 2021 D 1 HETATM 7 C C22 966 . . . DA 9 129.957 136.77 131.679 1 20.5 ? C22 966 2021 D 1 HETATM 8 C C24 966 . . . DA 9 132.81 133.908 129.28 1 20.5 ? C24 966 2021 D 1 HETATM 9 C C26 966 . . . DA 9 137.15 135.811 132.444 1 20.5 ? C26 966 2021 D 1 HETATM 10 C C28 966 . . . DA 9 128.515 137.192 131.601 1 20.5 ? C28 966 2021 D 1 HETATM 11 C C01 966 . . . DA 9 135.086 137.752 130.787 1 20.5 ? C01 966 2021 D 1 HETATM 12 C C02 966 . . . DA 9 134.384 139.102 131.533 1 20.5 ? C02 966 2021 D 1 HETATM 13 C C03 966 . . . DA 9 134.759 137.692 129.17 1 20.5 ? C03 966 2021 D 1 HETATM 14 C C04 966 . . . DA 9 134.222 136.518 131.088 1 20.5 ? C04 966 2021 D 1 HETATM 15 C C05 966 . . . DA 9 132.853 137.127 130.571 1 20.5 ? C05 966 2021 D 1 HETATM 16 C C06 966 . . . DA 9 132.79 139.219 131.752 1 20.5 ? C06 966 2021 D 1 HETATM 17 C C07 966 . . . DA 9 132.17 137.767 131.816 1 20.5 ? C07 966 2021 D 1 HETATM 18 C C08 966 . . . DA 9 133.131 137.521 129.105 1 20.5 ? C08 966 2021 D 1 HETATM 19 C C09 966 . . . DA 9 135.584 136.565 128.499 1 20.5 ? C09 966 2021 D 1 HETATM 20 C C11 966 . . . DA 9 133.678 139.337 133.878 1 20.5 ? C11 966 2021 D 1 HETATM 21 C C12 966 . . . DA 9 134.904 139.492 132.957 1 20.5 ? C12 966 2021 D 1 HETATM 22 C C14 966 . . . DA 9 132.424 137.132 133.2 1 20.5 ? C14 966 2021 D 1 HETATM 23 C C16 966 . . . DA 9 133.509 137.808 134.077 1 20.5 ? C16 966 2021 D 1 HETATM 24 C C18 966 . . . DA 9 137.547 136.997 130.114 1 20.5 ? C18 966 2021 D 1 HETATM 25 C C19 966 . . . DA 9 135.355 136.523 126.97 1 20.5 ? C19 966 2021 D 1 HETATM 26 C C23 966 . . . DA 9 131.035 138.49 128.503 1 20.5 ? C23 966 2021 D 1 HETATM 27 C C25 966 . . . DA 9 131.291 142.091 132.313 1 20.5 ? C25 966 2021 D 1 HETATM 28 C C27 966 . . . DA 9 133.9 136.187 135.729 1 20.5 ? C27 966 2021 D 1 HETATM 29 C C29 966 . . . DA 9 136.605 137.282 125.145 1 20.5 ? C29 966 2021 D 1 HETATM 30 C C30 966 . . . DA 9 131.305 143.394 131.817 1 20.5 ? C30 966 2021 D 1 HETATM 31 C C31 966 . . . DA 9 130.09 141.38 132.352 1 20.5 ? C31 966 2021 D 1 HETATM 32 C C32 966 . . . DA 9 130.13 143.986 131.358 1 20.5 ? C32 966 2021 D 1 HETATM 33 C C33 966 . . . DA 9 128.912 141.972 131.893 1 20.5 ? C33 966 2021 D 1 HETATM 34 C C34 966 . . . DA 9 128.932 143.277 131.396 1 20.5 ? C34 966 2021 D 1 HETATM 35 C C35 966 . . . DA 9 126.563 143.482 131.552 1 20.5 ? C35 966 2021 D 1 HETATM 36 N N01 966 . . . DA 9 134.551 135.23 130.443 1 20.5 ? N01 966 2021 D 1 HETATM 37 O O01 966 . . . DA 9 130.751 137.882 131.594 1 20.5 ? O01 966 2021 D 1 HETATM 38 O O02 966 . . . DA 9 132.445 138.645 128.616 1 20.5 ? O02 966 2021 D 1 HETATM 39 O O03 966 . . . DA 9 136.943 137.219 132.383 1 20.5 ? O03 966 2021 D 1 HETATM 40 O O04 966 . . . DA 9 133.917 140.018 135.099 1 20.5 ? O04 966 2021 D 1 HETATM 41 O O05 966 . . . DA 9 133.329 137.455 135.455 1 20.5 ? O05 966 2021 D 1 HETATM 42 O O06 966 . . . DA 9 136.607 136.484 126.325 1 20.5 ? O06 966 2021 D 1 HETATM 43 O O07 966 . . . DA 9 133.551 142.187 132.974 1 20.5 ? O07 966 2021 D 1 HETATM 44 O O08 966 . . . DA 9 130.296 135.596 131.777 1 20.5 ? O08 966 2021 D 1 HETATM 45 O O09 966 . . . DA 9 127.793 143.868 130.943 1 20.5 ? O09 966 2021 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 1100 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #