data_7W78 # _model_server_result.job_id P1dyGNMRuYIWrtu8pkNMMw _model_server_result.datetime_utc '2025-01-10 17:55:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7W78 # _exptl.entry_id 7W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W78 _cell.length_a 168.981 _cell.length_b 168.981 _cell.length_c 94.665 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 168.981 168.981 94.665 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 50 A SER 50 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OE1 GLN 90 A GLN 90 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 C MG MG . A MG 301 1_555 D O2B ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 C MG MG . A MG 301 1_555 D O3G ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 C MG MG . A MG 301 1_555 K O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 C MG MG . A MG 301 1_555 K O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7W78 _atom_sites.fract_transf_matrix[1][1] 0.005918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 301 MG MG . D 4 ANP A 1 302 302 ANP ANP . E 5 ACT A 1 303 401 ACT ACT . F 5 ACT A 1 304 402 ACT ACT . G 6 GOL B 1 401 411 GOL GOL . H 7 MYZ B 1 402 401 MYZ MYZ . I 7 MYZ B 1 403 402 MYZ MYZ . J 8 D12 B 1 404 403 D12 D12 . K 9 HOH A 1 401 81 HOH HOH . K 9 HOH A 2 402 52 HOH HOH . K 9 HOH A 3 403 69 HOH HOH . K 9 HOH A 4 404 39 HOH HOH . K 9 HOH A 5 405 59 HOH HOH . K 9 HOH A 6 406 50 HOH HOH . K 9 HOH A 7 407 57 HOH HOH . K 9 HOH A 8 408 53 HOH HOH . K 9 HOH A 9 409 56 HOH HOH . K 9 HOH A 10 410 68 HOH HOH . K 9 HOH A 11 411 1 HOH HOH . K 9 HOH A 12 412 65 HOH HOH . K 9 HOH A 13 413 60 HOH HOH . K 9 HOH A 14 414 76 HOH HOH . K 9 HOH A 15 415 49 HOH HOH . K 9 HOH A 16 416 86 HOH HOH . K 9 HOH A 17 417 9 HOH HOH . K 9 HOH A 18 418 64 HOH HOH . K 9 HOH A 19 419 44 HOH HOH . K 9 HOH A 20 420 67 HOH HOH . K 9 HOH A 21 421 42 HOH HOH . K 9 HOH A 22 422 30 HOH HOH . K 9 HOH A 23 423 54 HOH HOH . K 9 HOH A 24 424 24 HOH HOH . K 9 HOH A 25 425 79 HOH HOH . K 9 HOH A 26 426 2 HOH HOH . K 9 HOH A 27 427 4 HOH HOH . K 9 HOH A 28 428 48 HOH HOH . K 9 HOH A 29 429 62 HOH HOH . K 9 HOH A 30 430 12 HOH HOH . K 9 HOH A 31 431 34 HOH HOH . K 9 HOH A 32 432 111 HOH HOH . K 9 HOH A 33 433 84 HOH HOH . K 9 HOH A 34 434 28 HOH HOH . K 9 HOH A 35 435 51 HOH HOH . K 9 HOH A 36 436 3 HOH HOH . K 9 HOH A 37 437 63 HOH HOH . K 9 HOH A 38 438 83 HOH HOH . K 9 HOH A 39 439 82 HOH HOH . K 9 HOH A 40 440 38 HOH HOH . K 9 HOH A 41 441 80 HOH HOH . K 9 HOH A 42 442 43 HOH HOH . K 9 HOH A 43 443 36 HOH HOH . K 9 HOH A 44 444 11 HOH HOH . K 9 HOH A 45 445 55 HOH HOH . K 9 HOH A 46 446 41 HOH HOH . K 9 HOH A 47 447 29 HOH HOH . K 9 HOH A 48 448 75 HOH HOH . K 9 HOH A 49 449 70 HOH HOH . K 9 HOH A 50 450 6 HOH HOH . K 9 HOH A 51 451 77 HOH HOH . K 9 HOH A 52 452 31 HOH HOH . K 9 HOH A 53 453 32 HOH HOH . K 9 HOH A 54 454 73 HOH HOH . K 9 HOH A 55 455 25 HOH HOH . K 9 HOH A 56 456 78 HOH HOH . K 9 HOH A 57 457 5 HOH HOH . K 9 HOH A 58 458 37 HOH HOH . K 9 HOH A 59 459 74 HOH HOH . K 9 HOH A 60 460 26 HOH HOH . K 9 HOH A 61 461 88 HOH HOH . K 9 HOH A 62 462 13 HOH HOH . K 9 HOH A 63 463 40 HOH HOH . K 9 HOH A 64 464 85 HOH HOH . K 9 HOH A 65 465 92 HOH HOH . K 9 HOH A 66 466 22 HOH HOH . K 9 HOH A 67 467 27 HOH HOH . K 9 HOH A 68 468 35 HOH HOH . K 9 HOH A 69 469 47 HOH HOH . K 9 HOH A 70 470 20 HOH HOH . K 9 HOH A 71 471 61 HOH HOH . K 9 HOH A 72 472 23 HOH HOH . K 9 HOH A 73 473 10 HOH HOH . K 9 HOH A 74 474 72 HOH HOH . K 9 HOH A 75 475 46 HOH HOH . K 9 HOH A 76 476 45 HOH HOH . K 9 HOH A 77 477 14 HOH HOH . K 9 HOH A 78 478 66 HOH HOH . K 9 HOH A 79 479 91 HOH HOH . K 9 HOH A 80 480 71 HOH HOH . K 9 HOH A 81 481 93 HOH HOH . K 9 HOH A 82 482 33 HOH HOH . K 9 HOH A 83 483 58 HOH HOH . L 9 HOH B 1 501 115 HOH HOH . L 9 HOH B 2 502 94 HOH HOH . L 9 HOH B 3 503 7 HOH HOH . L 9 HOH B 4 504 97 HOH HOH . L 9 HOH B 5 505 19 HOH HOH . L 9 HOH B 6 506 15 HOH HOH . L 9 HOH B 7 507 102 HOH HOH . L 9 HOH B 8 508 95 HOH HOH . L 9 HOH B 9 509 112 HOH HOH . L 9 HOH B 10 510 103 HOH HOH . L 9 HOH B 11 511 100 HOH HOH . L 9 HOH B 12 512 87 HOH HOH . L 9 HOH B 13 513 104 HOH HOH . L 9 HOH B 14 514 114 HOH HOH . L 9 HOH B 15 515 8 HOH HOH . L 9 HOH B 16 516 21 HOH HOH . L 9 HOH B 17 517 98 HOH HOH . L 9 HOH B 18 518 90 HOH HOH . L 9 HOH B 19 519 101 HOH HOH . L 9 HOH B 20 520 96 HOH HOH . L 9 HOH B 21 521 113 HOH HOH . L 9 HOH B 22 522 17 HOH HOH . L 9 HOH B 23 523 108 HOH HOH . L 9 HOH B 24 524 16 HOH HOH . L 9 HOH B 25 525 107 HOH HOH . L 9 HOH B 26 526 99 HOH HOH . L 9 HOH B 27 527 18 HOH HOH . L 9 HOH B 28 528 105 HOH HOH . L 9 HOH B 29 529 89 HOH HOH . L 9 HOH B 30 530 106 HOH HOH . L 9 HOH B 31 531 116 HOH HOH . L 9 HOH B 32 532 110 HOH HOH . L 9 HOH B 33 533 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 72.804 99.516 37.987 1 23.68 ? PG ANP 302 A 1 HETATM 2 O O1G ANP . . . D 4 72.984 98.228 38.746 1 23.68 ? O1G ANP 302 A 1 HETATM 3 O O2G ANP . . . D 4 73.781 100.539 38.509 1 23.68 ? O2G ANP 302 A 1 HETATM 4 O O3G ANP . . . D 4 71.387 100.018 38.128 1 23.68 ? O3G ANP 302 A 1 HETATM 5 P PB ANP . . . D 4 71.928 99.117 35.177 1 23.68 ? PB ANP 302 A 1 HETATM 6 O O1B ANP . . . D 4 72.415 98.137 34.142 1 23.68 ? O1B ANP 302 A 1 HETATM 7 O O2B ANP . . . D 4 70.62 98.649 35.773 1 23.68 ? O2B ANP 302 A 1 HETATM 8 N N3B ANP . . . D 4 73.144 99.211 36.356 1 23.68 ? N3B ANP 302 A 1 HETATM 9 P PA ANP . . . D 4 70.433 101.131 33.661 1 23.68 ? PA ANP 302 A 1 HETATM 10 O O1A ANP . . . D 4 69.436 101.756 34.611 1 23.68 ? O1A ANP 302 A 1 HETATM 11 O O2A ANP . . . D 4 69.793 99.968 32.94 1 23.68 ? O2A ANP 302 A 1 HETATM 12 O O3A ANP . . . D 4 71.754 100.61 34.501 1 23.68 ? O3A ANP 302 A 1 HETATM 13 O O5' ANP . . . D 4 70.887 102.273 32.564 1 23.68 ? O5' ANP 302 A 1 HETATM 14 C C5' ANP . . . D 4 72.09 102.106 31.877 1 23.68 ? C5' ANP 302 A 1 HETATM 15 C C4' ANP . . . D 4 72.523 103.48 31.304 1 23.68 ? C4' ANP 302 A 1 HETATM 16 O O4' ANP . . . D 4 71.476 104.127 30.873 1 23.68 ? O4' ANP 302 A 1 HETATM 17 C C3' ANP . . . D 4 73.125 104.353 32.424 1 23.68 ? C3' ANP 302 A 1 HETATM 18 O O3' ANP . . . D 4 74.346 104.797 32.036 1 23.68 ? O3' ANP 302 A 1 HETATM 19 C C2' ANP . . . D 4 72.154 105.542 32.58 1 23.68 ? C2' ANP 302 A 1 HETATM 20 O O2' ANP . . . D 4 72.918 106.785 32.91 1 23.68 ? O2' ANP 302 A 1 HETATM 21 C C1' ANP . . . D 4 71.589 105.647 31.409 1 23.68 ? C1' ANP 302 A 1 HETATM 22 N N9 ANP . . . D 4 70.244 106.135 31.529 1 23.68 ? N9 ANP 302 A 1 HETATM 23 C C8 ANP . . . D 4 69.289 105.456 32.164 1 23.68 ? C8 ANP 302 A 1 HETATM 24 N N7 ANP . . . D 4 68.16 106.155 32.091 1 23.68 ? N7 ANP 302 A 1 HETATM 25 C C5 ANP . . . D 4 68.417 107.27 31.402 1 23.68 ? C5 ANP 302 A 1 HETATM 26 C C6 ANP . . . D 4 67.596 108.313 31.048 1 23.68 ? C6 ANP 302 A 1 HETATM 27 N N6 ANP . . . D 4 66.189 108.545 31.31 1 23.68 ? N6 ANP 302 A 1 HETATM 28 N N1 ANP . . . D 4 68.077 109.327 30.35 1 23.68 ? N1 ANP 302 A 1 HETATM 29 C C2 ANP . . . D 4 69.38 109.331 29.984 1 23.68 ? C2 ANP 302 A 1 HETATM 30 N N3 ANP . . . D 4 70.191 108.301 30.329 1 23.68 ? N3 ANP 302 A 1 HETATM 31 C C4 ANP . . . D 4 69.703 107.266 31.042 1 23.68 ? C4 ANP 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #