data_7W78 # _model_server_result.job_id upNfUdQEOrB58HeC0OuybA _model_server_result.datetime_utc '2025-01-10 17:55:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":404}' # _entry.id 7W78 # _exptl.entry_id 7W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W78 _cell.length_a 168.981 _cell.length_b 168.981 _cell.length_c 94.665 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 168.981 168.981 94.665 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 50 A SER 50 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OE1 GLN 90 A GLN 90 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 C MG MG . A MG 301 1_555 D O2B ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 C MG MG . A MG 301 1_555 D O3G ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 C MG MG . A MG 301 1_555 K O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 C MG MG . A MG 301 1_555 K O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 126 n n C1 H11 D12 sing 127 n n C1 H12 D12 sing 128 n n C1 H13 D12 sing 129 n n C2 C3 D12 sing 130 n n C2 H21 D12 sing 131 n n C2 H22 D12 sing 132 n n C3 C4 D12 sing 133 n n C3 H31 D12 sing 134 n n C3 H32 D12 sing 135 n n C4 C5 D12 sing 136 n n C4 H41 D12 sing 137 n n C4 H42 D12 sing 138 n n C5 C6 D12 sing 139 n n C5 H51 D12 sing 140 n n C5 H52 D12 sing 141 n n C6 C7 D12 sing 142 n n C6 H61 D12 sing 143 n n C6 H62 D12 sing 144 n n C7 C8 D12 sing 145 n n C7 H71 D12 sing 146 n n C7 H72 D12 sing 147 n n C8 C9 D12 sing 148 n n C8 H81 D12 sing 149 n n C8 H82 D12 sing 150 n n C9 C10 D12 sing 151 n n C9 H91 D12 sing 152 n n C9 H92 D12 sing 153 n n C10 C11 D12 sing 154 n n C10 H101 D12 sing 155 n n C10 H102 D12 sing 156 n n C11 C12 D12 sing 157 n n C11 H111 D12 sing 158 n n C11 H112 D12 sing 159 n n C12 H121 D12 sing 160 n n C12 H122 D12 sing 161 n n C12 H123 D12 sing 162 n n # _atom_sites.entry_id 7W78 _atom_sites.fract_transf_matrix[1][1] 0.005918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 301 MG MG . D 4 ANP A 1 302 302 ANP ANP . E 5 ACT A 1 303 401 ACT ACT . F 5 ACT A 1 304 402 ACT ACT . G 6 GOL B 1 401 411 GOL GOL . H 7 MYZ B 1 402 401 MYZ MYZ . I 7 MYZ B 1 403 402 MYZ MYZ . J 8 D12 B 1 404 403 D12 D12 . K 9 HOH A 1 401 81 HOH HOH . K 9 HOH A 2 402 52 HOH HOH . K 9 HOH A 3 403 69 HOH HOH . K 9 HOH A 4 404 39 HOH HOH . K 9 HOH A 5 405 59 HOH HOH . K 9 HOH A 6 406 50 HOH HOH . K 9 HOH A 7 407 57 HOH HOH . K 9 HOH A 8 408 53 HOH HOH . K 9 HOH A 9 409 56 HOH HOH . K 9 HOH A 10 410 68 HOH HOH . K 9 HOH A 11 411 1 HOH HOH . K 9 HOH A 12 412 65 HOH HOH . K 9 HOH A 13 413 60 HOH HOH . K 9 HOH A 14 414 76 HOH HOH . K 9 HOH A 15 415 49 HOH HOH . K 9 HOH A 16 416 86 HOH HOH . K 9 HOH A 17 417 9 HOH HOH . K 9 HOH A 18 418 64 HOH HOH . K 9 HOH A 19 419 44 HOH HOH . K 9 HOH A 20 420 67 HOH HOH . K 9 HOH A 21 421 42 HOH HOH . K 9 HOH A 22 422 30 HOH HOH . K 9 HOH A 23 423 54 HOH HOH . K 9 HOH A 24 424 24 HOH HOH . K 9 HOH A 25 425 79 HOH HOH . K 9 HOH A 26 426 2 HOH HOH . K 9 HOH A 27 427 4 HOH HOH . K 9 HOH A 28 428 48 HOH HOH . K 9 HOH A 29 429 62 HOH HOH . K 9 HOH A 30 430 12 HOH HOH . K 9 HOH A 31 431 34 HOH HOH . K 9 HOH A 32 432 111 HOH HOH . K 9 HOH A 33 433 84 HOH HOH . K 9 HOH A 34 434 28 HOH HOH . K 9 HOH A 35 435 51 HOH HOH . K 9 HOH A 36 436 3 HOH HOH . K 9 HOH A 37 437 63 HOH HOH . K 9 HOH A 38 438 83 HOH HOH . K 9 HOH A 39 439 82 HOH HOH . K 9 HOH A 40 440 38 HOH HOH . K 9 HOH A 41 441 80 HOH HOH . K 9 HOH A 42 442 43 HOH HOH . K 9 HOH A 43 443 36 HOH HOH . K 9 HOH A 44 444 11 HOH HOH . K 9 HOH A 45 445 55 HOH HOH . K 9 HOH A 46 446 41 HOH HOH . K 9 HOH A 47 447 29 HOH HOH . K 9 HOH A 48 448 75 HOH HOH . K 9 HOH A 49 449 70 HOH HOH . K 9 HOH A 50 450 6 HOH HOH . K 9 HOH A 51 451 77 HOH HOH . K 9 HOH A 52 452 31 HOH HOH . K 9 HOH A 53 453 32 HOH HOH . K 9 HOH A 54 454 73 HOH HOH . K 9 HOH A 55 455 25 HOH HOH . K 9 HOH A 56 456 78 HOH HOH . K 9 HOH A 57 457 5 HOH HOH . K 9 HOH A 58 458 37 HOH HOH . K 9 HOH A 59 459 74 HOH HOH . K 9 HOH A 60 460 26 HOH HOH . K 9 HOH A 61 461 88 HOH HOH . K 9 HOH A 62 462 13 HOH HOH . K 9 HOH A 63 463 40 HOH HOH . K 9 HOH A 64 464 85 HOH HOH . K 9 HOH A 65 465 92 HOH HOH . K 9 HOH A 66 466 22 HOH HOH . K 9 HOH A 67 467 27 HOH HOH . K 9 HOH A 68 468 35 HOH HOH . K 9 HOH A 69 469 47 HOH HOH . K 9 HOH A 70 470 20 HOH HOH . K 9 HOH A 71 471 61 HOH HOH . K 9 HOH A 72 472 23 HOH HOH . K 9 HOH A 73 473 10 HOH HOH . K 9 HOH A 74 474 72 HOH HOH . K 9 HOH A 75 475 46 HOH HOH . K 9 HOH A 76 476 45 HOH HOH . K 9 HOH A 77 477 14 HOH HOH . K 9 HOH A 78 478 66 HOH HOH . K 9 HOH A 79 479 91 HOH HOH . K 9 HOH A 80 480 71 HOH HOH . K 9 HOH A 81 481 93 HOH HOH . K 9 HOH A 82 482 33 HOH HOH . K 9 HOH A 83 483 58 HOH HOH . L 9 HOH B 1 501 115 HOH HOH . L 9 HOH B 2 502 94 HOH HOH . L 9 HOH B 3 503 7 HOH HOH . L 9 HOH B 4 504 97 HOH HOH . L 9 HOH B 5 505 19 HOH HOH . L 9 HOH B 6 506 15 HOH HOH . L 9 HOH B 7 507 102 HOH HOH . L 9 HOH B 8 508 95 HOH HOH . L 9 HOH B 9 509 112 HOH HOH . L 9 HOH B 10 510 103 HOH HOH . L 9 HOH B 11 511 100 HOH HOH . L 9 HOH B 12 512 87 HOH HOH . L 9 HOH B 13 513 104 HOH HOH . L 9 HOH B 14 514 114 HOH HOH . L 9 HOH B 15 515 8 HOH HOH . L 9 HOH B 16 516 21 HOH HOH . L 9 HOH B 17 517 98 HOH HOH . L 9 HOH B 18 518 90 HOH HOH . L 9 HOH B 19 519 101 HOH HOH . L 9 HOH B 20 520 96 HOH HOH . L 9 HOH B 21 521 113 HOH HOH . L 9 HOH B 22 522 17 HOH HOH . L 9 HOH B 23 523 108 HOH HOH . L 9 HOH B 24 524 16 HOH HOH . L 9 HOH B 25 525 107 HOH HOH . L 9 HOH B 26 526 99 HOH HOH . L 9 HOH B 27 527 18 HOH HOH . L 9 HOH B 28 528 105 HOH HOH . L 9 HOH B 29 529 89 HOH HOH . L 9 HOH B 30 530 106 HOH HOH . L 9 HOH B 31 531 116 HOH HOH . L 9 HOH B 32 532 110 HOH HOH . L 9 HOH B 33 533 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . J 8 41.546 98.019 57.569 1 51.56 ? C1 D12 404 B 1 HETATM 2 C C2 D12 . . . J 8 41.69 99.358 56.842 1 51.56 ? C2 D12 404 B 1 HETATM 3 C C3 D12 . . . J 8 40.347 100.093 56.81 1 51.56 ? C3 D12 404 B 1 HETATM 4 C C4 D12 . . . J 8 40.592 101.604 56.777 1 51.56 ? C4 D12 404 B 1 HETATM 5 C C5 D12 . . . J 8 39.313 102.359 57.153 1 51.56 ? C5 D12 404 B 1 HETATM 6 C C6 D12 . . . J 8 39.587 103.836 57.463 1 51.56 ? C6 D12 404 B 1 HETATM 7 C C7 D12 . . . J 8 38.653 104.717 56.625 1 51.56 ? C7 D12 404 B 1 HETATM 8 C C8 D12 . . . J 8 38.09 105.895 57.428 1 51.56 ? C8 D12 404 B 1 HETATM 9 C C9 D12 . . . J 8 37.507 106.936 56.468 1 51.56 ? C9 D12 404 B 1 HETATM 10 C C10 D12 . . . J 8 36.752 108.025 57.234 1 51.56 ? C10 D12 404 B 1 HETATM 11 C C11 D12 . . . J 8 36.665 109.296 56.386 1 51.56 ? C11 D12 404 B 1 HETATM 12 C C12 D12 . . . J 8 35.679 110.281 57.018 1 51.56 ? C12 D12 404 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #