data_7W79 # _model_server_result.job_id 8I2pe7qthfHVmwbCSOcmdQ _model_server_result.datetime_utc '2025-01-10 21:11:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7W79 # _exptl.entry_id 7W79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W79 _cell.length_a 169.369 _cell.length_b 169.369 _cell.length_c 95.053 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 169.369 169.369 95.053 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 32 A GLU 32 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc2 A OG SER 50 A SER 50 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A OE1 GLN 90 A GLN 90 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 A OE2 GLU 165 A GLU 165 1_555 G MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A O ALA 169 A ALA 169 1_555 G MN MN . A MN 305 8_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc6 C O2G ATP . A ATP 301 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc7 C O2B ATP . A ATP 301 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7W79 _atom_sites.fract_transf_matrix[1][1] 0.005904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 301 1 ATP ATP . D 4 MN A 1 302 6 MN MN . E 4 MN A 1 303 7 MN MN . F 4 MN A 1 304 10 MN MN . G 4 MN A 1 305 11 MN MN . H 4 MN B 1 401 5 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 73.382 100.026 37.985 1 72.63 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . C 3 74.471 101.043 38.282 1 72.63 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . C 3 72.244 99.983 38.98 1 72.63 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . C 3 74.009 98.682 37.76 1 72.63 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . C 3 72.398 99.467 35.239 1 72.63 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . C 3 73.584 98.636 34.842 1 72.63 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . C 3 71.093 98.748 35.278 1 72.63 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . C 3 72.669 100.382 36.577 1 72.63 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . C 3 70.791 101.392 33.835 1 72.63 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . C 3 70.141 101.835 35.128 1 72.63 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . C 3 70.033 100.557 32.846 1 72.63 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . C 3 72.203 100.658 34.15 1 72.63 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . C 3 71.325 102.7 33.11 1 72.63 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . C 3 71.825 102.559 31.805 1 72.63 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . C 3 72.599 103.797 31.4 1 72.63 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . C 3 71.76 104.807 30.871 1 72.63 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . C 3 73.378 104.447 32.518 1 72.63 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . C 3 74.677 104.636 31.964 1 72.63 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . C 3 72.716 105.776 32.793 1 72.63 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . C 3 73.658 106.849 33.026 1 72.63 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . C 3 71.962 106.08 31.515 1 72.63 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . C 3 70.588 106.593 31.659 1 72.63 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . C 3 69.64 105.877 32.272 1 72.63 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . C 3 68.449 106.497 32.252 1 72.63 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . C 3 68.63 107.65 31.592 1 72.63 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . C 3 67.723 108.763 31.23 1 72.63 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . C 3 66.401 108.676 31.628 1 72.63 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . C 3 68.268 109.799 30.523 1 72.63 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . C 3 69.574 109.773 30.186 1 72.63 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . C 3 70.455 108.795 30.483 1 72.63 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . C 3 70.042 107.716 31.185 1 72.63 ? C4 ATP 301 A 1 HETATM 32 H "H5'1" ATP . . . C 3 70.997 102.402 31.11 1 72.63 ? "H5'1" ATP 301 A 1 HETATM 33 H "H5'2" ATP . . . C 3 72.478 101.685 31.754 1 72.63 ? "H5'2" ATP 301 A 1 HETATM 34 H H4' ATP . . . C 3 73.32 103.497 30.626 1 72.63 ? H4' ATP 301 A 1 HETATM 35 H H3' ATP . . . C 3 73.392 103.812 33.414 1 72.63 ? H3' ATP 301 A 1 HETATM 36 H HO3' ATP . . . C 3 75.25 105.054 32.621 1 72.63 ? HO3' ATP 301 A 1 HETATM 37 H H2' ATP . . . C 3 72.01 105.678 33.629 1 72.63 ? H2' ATP 301 A 1 HETATM 38 H HO2' ATP . . . C 3 74.193 106.645 33.806 1 72.63 ? HO2' ATP 301 A 1 HETATM 39 H H1' ATP . . . C 3 72.563 106.744 30.878 1 72.63 ? H1' ATP 301 A 1 HETATM 40 H H8 ATP . . . C 3 69.815 104.917 32.743 1 72.63 ? H8 ATP 301 A 1 HETATM 41 H HN61 ATP . . . C 3 65.757 109.421 31.403 1 72.63 ? HN61 ATP 301 A 1 HETATM 42 H HN62 ATP . . . C 3 66.082 107.873 32.15 1 72.63 ? HN62 ATP 301 A 1 HETATM 43 H H2 ATP . . . C 3 69.953 110.622 29.63 1 72.63 ? H2 ATP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #