data_7W7A
#
_model_server_result.job_id            i8yz6g5T5N-ARpcA5Te8rA 
_model_server_result.datetime_utc      '2025-01-10 21:18:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w7a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":401}' 
#
_entry.id    7W7A 
#
_exptl.entry_id    7W7A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.58 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING MN' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.81 
_cell.angle_beta          99.83 
_cell.angle_gamma         94.43 
_cell.entry_id            7W7A 
_cell.length_a            82.488 
_cell.length_b            133.672 
_cell.length_c            159.838 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W7A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O,P 1 1 
E,F,G,H,Q,R 2 1 
I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 219 B GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc2 D OE2 GLU 219 D GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc3 F OE2 GLU 219 F GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc4 H OE2 GLU 219 H GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
#
_chem_comp.formula           'C34 H32 Mn N4 O4 5' 
_chem_comp.formula_weight    615.58 
_chem_comp.id                MNR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING MN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A MNR sing 296 n y 
CHA C4D MNR doub 297 n y 
CHA HHA MNR sing 298 n n 
CHB C4A MNR doub 299 n y 
CHB C1B MNR sing 300 n y 
CHB HHB MNR sing 301 n n 
CHC C4B MNR sing 302 n y 
CHC C1C MNR doub 303 n y 
CHC HHC MNR sing 304 n n 
CHD C4C MNR sing 305 n y 
CHD C1D MNR doub 306 n y 
CHD HHD MNR sing 307 n n 
C1A C2A MNR sing 308 n n 
C1A NA MNR doub 309 n y 
C2A C3A MNR doub 310 n n 
C2A CAA MNR sing 311 n n 
C3A C4A MNR sing 312 n n 
C3A CMA MNR sing 313 n n 
C4A NA MNR sing 314 n y 
CMA HMA1 MNR sing 315 n n 
CMA HMA2 MNR sing 316 n n 
CMA HMA3 MNR sing 317 n n 
CAA CBA MNR sing 318 n n 
CAA HAA1 MNR sing 319 n n 
CAA HAA2 MNR sing 320 n n 
CBA CGA MNR sing 321 n n 
CBA HBA1 MNR sing 322 n n 
CBA HBA2 MNR sing 323 n n 
CGA O1A MNR doub 324 n n 
CGA O2A MNR sing 325 n n 
O2A H2A MNR sing 326 n n 
C1B C2B MNR doub 327 n y 
C1B NB MNR sing 328 n y 
C2B C3B MNR sing 329 n y 
C2B CMB MNR sing 330 n n 
C3B C4B MNR doub 331 n y 
C3B CAB MNR sing 332 n n 
C4B NB MNR sing 333 n y 
CMB HMB1 MNR sing 334 n n 
CMB HMB2 MNR sing 335 n n 
CMB HMB3 MNR sing 336 n n 
CAB CBB MNR doub 337 n n 
CAB HAB MNR sing 338 n n 
CBB HBB1 MNR sing 339 n n 
CBB HBB2 MNR sing 340 n n 
C1C C2C MNR sing 341 n n 
C1C NC MNR sing 342 n y 
C2C C3C MNR doub 343 n n 
C2C CMC MNR sing 344 n n 
C3C C4C MNR sing 345 n n 
C3C CAC MNR sing 346 n n 
C4C NC MNR doub 347 n y 
CMC HMC1 MNR sing 348 n n 
CMC HMC2 MNR sing 349 n n 
CMC HMC3 MNR sing 350 n n 
CAC CBC MNR doub 351 n n 
CAC HAC MNR sing 352 n n 
CBC HBC1 MNR sing 353 n n 
CBC HBC2 MNR sing 354 n n 
C1D C2D MNR sing 355 n y 
C1D ND MNR sing 356 n y 
C2D C3D MNR doub 357 n y 
C2D CMD MNR sing 358 n n 
C3D C4D MNR sing 359 n y 
C3D CAD MNR sing 360 n n 
C4D ND MNR sing 361 n y 
CMD HMD1 MNR sing 362 n n 
CMD HMD2 MNR sing 363 n n 
CMD HMD3 MNR sing 364 n n 
CAD CBD MNR sing 365 n n 
CAD HAD1 MNR sing 366 n n 
CAD HAD2 MNR sing 367 n n 
CBD CGD MNR sing 368 n n 
CBD HBD1 MNR sing 369 n n 
CBD HBD2 MNR sing 370 n n 
CGD O1D MNR sing 371 n n 
CGD O2D MNR doub 372 n n 
O1D H1D MNR sing 373 n n 
MN NA MNR sing 374 n n 
MN NB MNR sing 375 n n 
MN NC MNR sing 376 n n 
MN ND MNR sing 377 n n 
#
_atom_sites.entry_id                     7W7A 
_atom_sites.fract_transf_matrix[1][1]    0.012123 
_atom_sites.fract_transf_matrix[1][2]    0.000939 
_atom_sites.fract_transf_matrix[1][3]    0.002683 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007503 
_atom_sites.fract_transf_matrix[2][3]    0.003193 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 AGA B 1 501 501 AGA AGA . 
N 4 PGE B 1 502 502 PGE PGE . 
O 5 MNR D 1 401 401 MNR MNR . 
P 6 PEG D 1 402 502 PEG PEG . 
Q 5 MNR H 1 401 401 MNR MNR . 
R 7 EDO H 1 402 502 EDO EDO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA MNR . . . Q 5 54.515 6.044 182.626 1 480.82 ? CHA MNR 401 H 1 
HETATM 2 C CHB MNR . . . Q 5 57.482 5.406 178.713 1 483.37 ? CHB MNR 401 H 1 
HETATM 3 C CHC MNR . . . Q 5 59.454 1.589 181.342 1 483.56 ? CHC MNR 401 H 1 
HETATM 4 C CHD MNR . . . Q 5 58.178 4.214 185.332 1 482.52 ? CHD MNR 401 H 1 
HETATM 5 C C1A MNR . . . Q 5 55.058 6.164 181.267 1 481.44 ? C1A MNR 401 H 1 
HETATM 6 C C2A MNR . . . Q 5 54.428 6.989 180.198 1 481.41 ? C2A MNR 401 H 1 
HETATM 7 C C3A MNR . . . Q 5 55.322 6.786 179.037 1 482.19 ? C3A MNR 401 H 1 
HETATM 8 C C4A MNR . . . Q 5 56.377 5.879 179.561 1 482.57 ? C4A MNR 401 H 1 
HETATM 9 C CMA MNR . . . Q 5 55.199 7.368 177.653 1 482.56 ? CMA MNR 401 H 1 
HETATM 10 C CAA MNR . . . Q 5 53.173 7.827 180.253 1 480.78 ? CAA MNR 401 H 1 
HETATM 11 C CBA MNR . . . Q 5 53.537 9.304 180.348 1 481.34 ? CBA MNR 401 H 1 
HETATM 12 C CGA MNR . . . Q 5 52.331 10.141 179.987 1 480.86 ? CGA MNR 401 H 1 
HETATM 13 O O1A MNR . . . Q 5 51.577 10.526 180.906 1 480.29 ? O1A MNR 401 H 1 
HETATM 14 O O2A MNR . . . Q 5 52.128 10.411 178.783 1 481.08 ? O2A MNR 401 H 1 
HETATM 15 C C1B MNR . . . Q 5 58.304 4.229 179.007 1 483.63 ? C1B MNR 401 H 1 
HETATM 16 C C2B MNR . . . Q 5 59.231 3.545 178.057 1 484.34 ? C2B MNR 401 H 1 
HETATM 17 C C3B MNR . . . Q 5 59.8 2.415 178.861 1 484.36 ? C3B MNR 401 H 1 
HETATM 18 C C4B MNR . . . Q 5 59.203 2.487 180.217 1 483.71 ? C4B MNR 401 H 1 
HETATM 19 C CMB MNR . . . Q 5 59.479 3.954 176.629 1 484.91 ? CMB MNR 401 H 1 
HETATM 20 C CAB MNR . . . Q 5 60.796 1.376 178.481 1 484.96 ? CAB MNR 401 H 1 
HETATM 21 C CBB MNR . . . Q 5 61.118 1.083 177.237 1 485.43 ? CBB MNR 401 H 1 
HETATM 22 C C1C MNR . . . Q 5 59.378 2.041 182.735 1 483.34 ? C1C MNR 401 H 1 
HETATM 23 C C2C MNR . . . Q 5 60.16 1.384 183.822 1 483.62 ? C2C MNR 401 H 1 
HETATM 24 C C3C MNR . . . Q 5 59.765 2.183 184.995 1 483.32 ? C3C MNR 401 H 1 
HETATM 25 C C4C MNR . . . Q 5 58.816 3.202 184.49 1 482.88 ? C4C MNR 401 H 1 
HETATM 26 C CMC MNR . . . Q 5 61.103 0.213 183.744 1 484.14 ? CMC MNR 401 H 1 
HETATM 27 C CAC MNR . . . Q 5 60.221 1.994 186.394 1 483.46 ? CAC MNR 401 H 1 
HETATM 28 C CBC MNR . . . Q 5 59.371 1.565 187.309 1 482.78 ? CBC MNR 401 H 1 
HETATM 29 C C1D MNR . . . Q 5 56.934 4.905 184.997 1 481.85 ? C1D MNR 401 H 1 
HETATM 30 C C2D MNR . . . Q 5 56.054 5.539 186.014 1 481.28 ? C2D MNR 401 H 1 
HETATM 31 C C3D MNR . . . Q 5 54.943 6.095 185.206 1 480.74 ? C3D MNR 401 H 1 
HETATM 32 C C4D MNR . . . Q 5 55.317 5.718 183.81 1 481.1 ? C4D MNR 401 H 1 
HETATM 33 C CMD MNR . . . Q 5 56.257 5.594 187.507 1 481.29 ? CMD MNR 401 H 1 
HETATM 34 C CAD MNR . . . Q 5 53.732 6.868 185.684 1 480.05 ? CAD MNR 401 H 1 
HETATM 35 C CBD MNR . . . Q 5 52.899 6.055 186.67 1 479.25 ? CBD MNR 401 H 1 
HETATM 36 C CGD MNR . . . Q 5 51.828 6.939 187.265 1 478.66 ? CGD MNR 401 H 1 
HETATM 37 O O1D MNR . . . Q 5 51.002 6.428 188.052 1 477.96 ? O1D MNR 401 H 1 
HETATM 38 O O2D MNR . . . Q 5 51.811 8.149 186.953 1 478.94 ? O2D MNR 401 H 1 
HETATM 39 MN MN MNR . . . Q 5 57.374 4.302 182.021 1 482.47 ? MN MNR 401 H 1 
HETATM 40 N NA MNR . . . Q 5 56.175 5.54 180.852 1 482.11 ? NA MNR 401 H 1 
HETATM 41 N NB MNR . . . Q 5 58.27 3.581 180.298 1 483.25 ? NB MNR 401 H 1 
HETATM 42 N NC MNR . . . Q 5 58.625 3.084 183.165 1 482.92 ? NC MNR 401 H 1 
HETATM 43 N ND MNR . . . Q 5 56.468 5.031 183.746 1 481.73 ? ND MNR 401 H 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#