data_7W7B
#
_model_server_result.job_id            FDHcbfEMWmSuExJVRwYTkA 
_model_server_result.datetime_utc      '2025-01-10 21:17:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w7b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":401}' 
#
_entry.id    7W7B 
#
_exptl.entry_id    7W7B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.58 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING MN' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.65 
_cell.angle_beta          99.69 
_cell.angle_gamma         94.64 
_cell.entry_id            7W7B 
_cell.length_a            82.001 
_cell.length_b            133.485 
_cell.length_c            159.341 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W7B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O,P 1 1 
E,F,G,H,Q,R 2 1 
I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 219 B GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 D OE2 GLU 219 D GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc3 F OE2 GLU 219 F GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 H OE2 GLU 219 H GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'C34 H32 Mn N4 O4 5' 
_chem_comp.formula_weight    615.58 
_chem_comp.id                MNR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING MN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A MNR sing 287 n y 
CHA C4D MNR doub 288 n y 
CHA HHA MNR sing 289 n n 
CHB C4A MNR doub 290 n y 
CHB C1B MNR sing 291 n y 
CHB HHB MNR sing 292 n n 
CHC C4B MNR sing 293 n y 
CHC C1C MNR doub 294 n y 
CHC HHC MNR sing 295 n n 
CHD C4C MNR sing 296 n y 
CHD C1D MNR doub 297 n y 
CHD HHD MNR sing 298 n n 
C1A C2A MNR sing 299 n n 
C1A NA MNR doub 300 n y 
C2A C3A MNR doub 301 n n 
C2A CAA MNR sing 302 n n 
C3A C4A MNR sing 303 n n 
C3A CMA MNR sing 304 n n 
C4A NA MNR sing 305 n y 
CMA HMA1 MNR sing 306 n n 
CMA HMA2 MNR sing 307 n n 
CMA HMA3 MNR sing 308 n n 
CAA CBA MNR sing 309 n n 
CAA HAA1 MNR sing 310 n n 
CAA HAA2 MNR sing 311 n n 
CBA CGA MNR sing 312 n n 
CBA HBA1 MNR sing 313 n n 
CBA HBA2 MNR sing 314 n n 
CGA O1A MNR doub 315 n n 
CGA O2A MNR sing 316 n n 
O2A H2A MNR sing 317 n n 
C1B C2B MNR doub 318 n y 
C1B NB MNR sing 319 n y 
C2B C3B MNR sing 320 n y 
C2B CMB MNR sing 321 n n 
C3B C4B MNR doub 322 n y 
C3B CAB MNR sing 323 n n 
C4B NB MNR sing 324 n y 
CMB HMB1 MNR sing 325 n n 
CMB HMB2 MNR sing 326 n n 
CMB HMB3 MNR sing 327 n n 
CAB CBB MNR doub 328 n n 
CAB HAB MNR sing 329 n n 
CBB HBB1 MNR sing 330 n n 
CBB HBB2 MNR sing 331 n n 
C1C C2C MNR sing 332 n n 
C1C NC MNR sing 333 n y 
C2C C3C MNR doub 334 n n 
C2C CMC MNR sing 335 n n 
C3C C4C MNR sing 336 n n 
C3C CAC MNR sing 337 n n 
C4C NC MNR doub 338 n y 
CMC HMC1 MNR sing 339 n n 
CMC HMC2 MNR sing 340 n n 
CMC HMC3 MNR sing 341 n n 
CAC CBC MNR doub 342 n n 
CAC HAC MNR sing 343 n n 
CBC HBC1 MNR sing 344 n n 
CBC HBC2 MNR sing 345 n n 
C1D C2D MNR sing 346 n y 
C1D ND MNR sing 347 n y 
C2D C3D MNR doub 348 n y 
C2D CMD MNR sing 349 n n 
C3D C4D MNR sing 350 n y 
C3D CAD MNR sing 351 n n 
C4D ND MNR sing 352 n y 
CMD HMD1 MNR sing 353 n n 
CMD HMD2 MNR sing 354 n n 
CMD HMD3 MNR sing 355 n n 
CAD CBD MNR sing 356 n n 
CAD HAD1 MNR sing 357 n n 
CAD HAD2 MNR sing 358 n n 
CBD CGD MNR sing 359 n n 
CBD HBD1 MNR sing 360 n n 
CBD HBD2 MNR sing 361 n n 
CGD O1D MNR sing 362 n n 
CGD O2D MNR doub 363 n n 
O1D H1D MNR sing 364 n n 
MN NA MNR sing 365 n n 
MN NB MNR sing 366 n n 
MN NC MNR sing 367 n n 
MN ND MNR sing 368 n n 
#
_atom_sites.entry_id                     7W7B 
_atom_sites.fract_transf_matrix[1][1]    0.012195 
_atom_sites.fract_transf_matrix[1][2]    0.000989 
_atom_sites.fract_transf_matrix[1][3]    0.002679 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007516 
_atom_sites.fract_transf_matrix[2][3]    0.003177 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 AGA B 1 501 501 AGA AGA . 
N 4 PGE B 1 502 502 PGE PGE . 
O 5 MNR D 1 401 401 MNR MNR . 
P 6 PEG D 1 402 502 PEG PEG . 
Q 5 MNR H 1 401 401 MNR MNR . 
R 6 PEG H 1 402 502 PEG PEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA MNR . . . O 5 48.634 -4.916 19.857 1 119.75 ? CHA MNR 401 D 1 
HETATM 2 C CHB MNR . . . O 5 51.082 -5.758 24.034 1 119.75 ? CHB MNR 401 D 1 
HETATM 3 C CHC MNR . . . O 5 49.005 -1.848 25.95 1 119.75 ? CHC MNR 401 D 1 
HETATM 4 C CHD MNR . . . O 5 47.348 -0.56 21.563 1 119.75 ? CHD MNR 401 D 1 
HETATM 5 C C1A MNR . . . O 5 49.486 -5.514 20.802 1 119.75 ? C1A MNR 401 D 1 
HETATM 6 C C2A MNR . . . O 5 50.274 -6.742 20.568 1 119.75 ? C2A MNR 401 D 1 
HETATM 7 C C3A MNR . . . O 5 50.951 -6.962 21.746 1 119.75 ? C3A MNR 401 D 1 
HETATM 8 C C4A MNR . . . O 5 50.603 -5.904 22.693 1 119.75 ? C4A MNR 401 D 1 
HETATM 9 C CMA MNR . . . O 5 51.902 -8.113 22.019 1 119.75 ? CMA MNR 401 D 1 
HETATM 10 C CAA MNR . . . O 5 50.296 -7.587 19.259 1 119.75 ? CAA MNR 401 D 1 
HETATM 11 C CBA MNR . . . O 5 51.556 -7.412 18.431 1 119.75 ? CBA MNR 401 D 1 
HETATM 12 C CGA MNR . . . O 5 51.557 -8.316 17.196 1 119.75 ? CGA MNR 401 D 1 
HETATM 13 O O1A MNR . . . O 5 52.464 -8.21 16.352 1 119.75 ? O1A MNR 401 D 1 
HETATM 14 O O2A MNR . . . O 5 50.631 -9.138 17.078 1 119.75 ? O2A MNR 401 D 1 
HETATM 15 C C1B MNR . . . O 5 50.723 -4.748 24.952 1 119.75 ? C1B MNR 401 D 1 
HETATM 16 C C2B MNR . . . O 5 51.201 -4.622 26.32 1 119.75 ? C2B MNR 401 D 1 
HETATM 17 C C3B MNR . . . O 5 50.637 -3.513 26.906 1 119.75 ? C3B MNR 401 D 1 
HETATM 18 C C4B MNR . . . O 5 49.789 -2.98 25.822 1 119.75 ? C4B MNR 401 D 1 
HETATM 19 C CMB MNR . . . O 5 52.171 -5.61 26.915 1 119.75 ? CMB MNR 401 D 1 
HETATM 20 C CAB MNR . . . O 5 50.744 -2.935 28.182 1 119.75 ? CAB MNR 401 D 1 
HETATM 21 C CBB MNR . . . O 5 51.371 -3.407 29.316 1 119.75 ? CBB MNR 401 D 1 
HETATM 22 C C1C MNR . . . O 5 48.412 -1.094 24.913 1 119.75 ? C1C MNR 401 D 1 
HETATM 23 C C2C MNR . . . O 5 47.878 0.256 25.043 1 119.75 ? C2C MNR 401 D 1 
HETATM 24 C C3C MNR . . . O 5 47.416 0.623 23.808 1 119.75 ? C3C MNR 401 D 1 
HETATM 25 C C4C MNR . . . O 5 47.671 -0.515 22.928 1 119.75 ? C4C MNR 401 D 1 
HETATM 26 C CMC MNR . . . O 5 47.88 1.056 26.36 1 119.75 ? CMC MNR 401 D 1 
HETATM 27 C CAC MNR . . . O 5 46.81 1.817 23.376 1 119.75 ? CAC MNR 401 D 1 
HETATM 28 C CBC MNR . . . O 5 46.179 2.802 24.108 1 119.75 ? CBC MNR 401 D 1 
HETATM 29 C C1D MNR . . . O 5 47.545 -1.637 20.695 1 119.75 ? C1D MNR 401 D 1 
HETATM 30 C C2D MNR . . . O 5 47.166 -1.658 19.292 1 119.75 ? C2D MNR 401 D 1 
HETATM 31 C C3D MNR . . . O 5 47.522 -2.89 18.804 1 119.75 ? C3D MNR 401 D 1 
HETATM 32 C C4D MNR . . . O 5 48.122 -3.61 19.914 1 119.75 ? C4D MNR 401 D 1 
HETATM 33 C CMD MNR . . . O 5 46.495 -0.501 18.558 1 119.75 ? CMD MNR 401 D 1 
HETATM 34 C CAD MNR . . . O 5 47.366 -3.482 17.395 1 119.75 ? CAD MNR 401 D 1 
HETATM 35 C CBD MNR . . . O 5 46.001 -3.384 16.737 1 119.75 ? CBD MNR 401 D 1 
HETATM 36 C CGD MNR . . . O 5 45.737 -4.456 15.698 1 119.75 ? CGD MNR 401 D 1 
HETATM 37 O O1D MNR . . . O 5 44.632 -5.034 15.726 1 119.75 ? O1D MNR 401 D 1 
HETATM 38 O O2D MNR . . . O 5 46.626 -4.716 14.861 1 119.75 ? O2D MNR 401 D 1 
HETATM 39 MN MN MNR . . . O 5 48.857 -3.375 22.92 1 119.75 ? MN MNR 401 D 1 
HETATM 40 N NA MNR . . . O 5 49.702 -5.01 22.089 1 119.75 ? NA MNR 401 D 1 
HETATM 41 N NB MNR . . . O 5 49.859 -3.724 24.652 1 119.75 ? NB MNR 401 D 1 
HETATM 42 N NC MNR . . . O 5 48.292 -1.547 23.625 1 119.75 ? NC MNR 401 D 1 
HETATM 43 N ND MNR . . . O 5 48.139 -2.841 21.046 1 119.75 ? ND MNR 401 D 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#