data_7W7B # _model_server_result.job_id cHLYlQXYnsB_DoLk43-hRA _model_server_result.datetime_utc '2025-01-10 21:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":501}' # _entry.id 7W7B # _exptl.entry_id 7W7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.457 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.65 _cell.angle_beta 99.69 _cell.angle_gamma 94.64 _cell.entry_id 7W7B _cell.length_a 82.001 _cell.length_b 133.485 _cell.length_c 159.341 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,O,P 1 1 E,F,G,H,Q,R 2 1 I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 219 B GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 D OE2 GLU 219 D GLU 219 1_555 O MN MNR . D MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 F OE2 GLU 219 F GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 H OE2 GLU 219 H GLU 219 1_555 Q MN MNR . H MNR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'C19 H36 O10 P -1' _chem_comp.formula_weight 455.457 _chem_comp.id AGA _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYL GLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 AGA sing 1 n n O1 HO1 AGA sing 2 n n C1 C2 AGA sing 3 n n C1 H11 AGA sing 4 n n C1 H12 AGA sing 5 n n C2 O2 AGA sing 6 n n C2 C3 AGA sing 7 n n C2 H2 AGA sing 8 n n O2 HO2 AGA sing 9 n n C3 O5 AGA sing 10 n n C3 H31 AGA sing 11 n n C3 H32 AGA sing 12 n n P1 O3 AGA sing 13 n n P1 O4 AGA doub 14 n n P1 O5 AGA sing 15 n n P1 O6 AGA sing 16 n n O6 C4 AGA sing 17 n n C4 C5 AGA sing 18 n n C4 H41 AGA sing 19 n n C4 H42 AGA sing 20 n n C5 C6 AGA sing 21 n n C5 O9 AGA sing 22 n n C5 H5 AGA sing 23 n n C6 O7 AGA sing 24 n n C6 H61 AGA sing 25 n n C6 H62 AGA sing 26 n n O7 C7 AGA sing 27 n n C7 O8 AGA doub 28 n n C7 C8 AGA sing 29 n n C8 C9 AGA sing 30 n n C8 H81 AGA sing 31 n n C8 H82 AGA sing 32 n n C9 C10 AGA sing 33 n n C9 H91 AGA sing 34 n n C9 H92 AGA sing 35 n n C10 C11 AGA sing 36 n n C10 H101 AGA sing 37 n n C10 H102 AGA sing 38 n n C11 H111 AGA sing 39 n n C11 H112 AGA sing 40 n n C11 H113 AGA sing 41 n n O9 C12 AGA sing 42 n n C12 O10 AGA doub 43 n n C12 C13 AGA sing 44 n n C13 C14 AGA sing 45 n n C13 H131 AGA sing 46 n n C13 H132 AGA sing 47 n n C14 C15 AGA sing 48 n n C14 H141 AGA sing 49 n n C14 H142 AGA sing 50 n n C15 C16 AGA sing 51 n n C15 H151 AGA sing 52 n n C15 H152 AGA sing 53 n n C16 C17 AGA sing 54 n n C16 H161 AGA sing 55 n n C16 H162 AGA sing 56 n n C17 C18 AGA sing 57 n n C17 H171 AGA sing 58 n n C17 H172 AGA sing 59 n n C18 C19 AGA sing 60 n n C18 H181 AGA sing 61 n n C18 H182 AGA sing 62 n n C19 H191 AGA sing 63 n n C19 H192 AGA sing 64 n n C19 H193 AGA sing 65 n n # _atom_sites.entry_id 7W7B _atom_sites.fract_transf_matrix[1][1] 0.012195 _atom_sites.fract_transf_matrix[1][2] 0.000989 _atom_sites.fract_transf_matrix[1][3] 0.002679 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007516 _atom_sites.fract_transf_matrix[2][3] 0.003177 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 AGA B 1 501 501 AGA AGA . N 4 PGE B 1 502 502 PGE PGE . O 5 MNR D 1 401 401 MNR MNR . P 6 PEG D 1 402 502 PEG PEG . Q 5 MNR H 1 401 401 MNR MNR . R 6 PEG H 1 402 502 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AGA . . . M 3 67.917 -0.377 22.092 1 142.29 ? P1 AGA 501 B 1 HETATM 2 O O3 AGA . . . M 3 67.777 0.838 21.216 1 142.29 ? O3 AGA 501 B 1 HETATM 3 O O4 AGA . . . M 3 69.162 -1.217 22.024 1 142.29 ? O4 AGA 501 B 1 HETATM 4 O O5 AGA . . . M 3 66.653 -1.334 21.83 1 142.29 ? O5 AGA 501 B 1 HETATM 5 O O6 AGA . . . M 3 67.698 0.093 23.612 1 142.29 ? O6 AGA 501 B 1 HETATM 6 C C4 AGA . . . M 3 67.865 -0.867 24.69 1 142.29 ? C4 AGA 501 B 1 HETATM 7 C C5 AGA . . . M 3 67.477 -0.172 25.974 1 142.29 ? C5 AGA 501 B 1 HETATM 8 C C6 AGA . . . M 3 65.999 0.141 26.054 1 142.29 ? C6 AGA 501 B 1 HETATM 9 O O7 AGA . . . M 3 65.749 0.904 27.254 1 142.29 ? O7 AGA 501 B 1 HETATM 10 C C7 AGA . . . M 3 64.501 0.895 27.71 1 142.29 ? C7 AGA 501 B 1 HETATM 11 O O8 AGA . . . M 3 63.619 0.245 27.21 1 142.29 ? O8 AGA 501 B 1 HETATM 12 C C8 AGA . . . M 3 64.35 1.787 28.911 1 142.29 ? C8 AGA 501 B 1 HETATM 13 C C9 AGA . . . M 3 64.051 1.04 30.173 1 142.29 ? C9 AGA 501 B 1 HETATM 14 C C10 AGA . . . M 3 63.846 1.945 31.376 1 142.29 ? C10 AGA 501 B 1 HETATM 15 O O9 AGA . . . M 3 67.846 -0.989 27.12 1 142.29 ? O9 AGA 501 B 1 HETATM 16 C C12 AGA . . . M 3 68.428 -0.37 28.16 1 142.29 ? C12 AGA 501 B 1 HETATM 17 O O10 AGA . . . M 3 69.056 0.646 28.018 1 142.29 ? O10 AGA 501 B 1 HETATM 18 C C13 AGA . . . M 3 68.17 -1.01 29.497 1 142.29 ? C13 AGA 501 B 1 HETATM 19 C C14 AGA . . . M 3 68.679 -0.187 30.64 1 142.29 ? C14 AGA 501 B 1 HETATM 20 C C15 AGA . . . M 3 68.129 -0.633 31.984 1 142.29 ? C15 AGA 501 B 1 HETATM 21 C C16 AGA . . . M 3 68.467 0.3 33.122 1 142.29 ? C16 AGA 501 B 1 HETATM 22 C C17 AGA . . . M 3 67.816 -0.055 34.437 1 142.29 ? C17 AGA 501 B 1 HETATM 23 C C18 AGA . . . M 3 68.093 0.92 35.553 1 142.29 ? C18 AGA 501 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #