data_7W7D # _model_server_result.job_id 8GFrejKGUeaU5uMG1EnJ2g _model_server_result.datetime_utc '2024-10-18 16:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 7W7D # _exptl.entry_id 7W7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 112.488 _cell.angle_beta 100.412 _cell.angle_gamma 93.776 _cell.entry_id 7W7D _cell.length_a 82.585 _cell.length_b 135.026 _cell.length_c 160.969 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M 1 1 E,F,G,H,N 2 1 I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 219 B GLU 219 1_555 M FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 D OE2 GLU 219 D GLU 219 1_555 M FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 F OE2 GLU 219 F GLU 219 1_555 N FE HEM . F HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 N FE HEM . F HEM 401 1_555 H OE2 GLU 219 H GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 7W7D _atom_sites.fract_transf_matrix[1][1] 0.012109 _atom_sites.fract_transf_matrix[1][2] 0.000799 _atom_sites.fract_transf_matrix[1][3] 0.002781 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007422 _atom_sites.fract_transf_matrix[2][3] 0.003257 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 HEM D 1 401 401 HEM HEM . N 3 HEM F 1 401 401 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . M 3 7.316 54.029 -8.859 0.78 268.43 ? CHA HEM 401 D 1 HETATM 2 C CHB HEM . . . M 3 8.949 50.002 -11.03 0.78 268.43 ? CHB HEM 401 D 1 HETATM 3 C CHC HEM . . . M 3 10.78 48.456 -6.795 0.78 268.43 ? CHC HEM 401 D 1 HETATM 4 C CHD HEM . . . M 3 9.12 52.468 -4.614 0.78 268.43 ? CHD HEM 401 D 1 HETATM 5 C C1A HEM . . . M 3 7.544 53.059 -9.818 0.78 208.43 ? C1A HEM 401 D 1 HETATM 6 C C2A HEM . . . M 3 7.047 53.046 -11.183 0.78 208.43 ? C2A HEM 401 D 1 HETATM 7 C C3A HEM . . . M 3 7.497 51.936 -11.773 0.78 208.43 ? C3A HEM 401 D 1 HETATM 8 C C4A HEM . . . M 3 8.302 51.203 -10.814 0.78 208.43 ? C4A HEM 401 D 1 HETATM 9 C CMA HEM . . . M 3 7.207 51.517 -13.231 0.78 268.43 ? CMA HEM 401 D 1 HETATM 10 C CAA HEM . . . M 3 6.143 54.116 -11.843 0.78 268.43 ? CAA HEM 401 D 1 HETATM 11 C CBA HEM . . . M 3 6.921 54.89 -12.905 0.78 268.43 ? CBA HEM 401 D 1 HETATM 12 C CGA HEM . . . M 3 6.321 54.733 -14.282 0.78 268.43 ? CGA HEM 401 D 1 HETATM 13 O O1A HEM . . . M 3 6.876 55.34 -15.232 0.78 268.43 ? O1A HEM 401 D 1 HETATM 14 O O2A HEM . . . M 3 5.301 54.017 -14.448 0.78 268.43 ? O2A HEM 401 D 1 HETATM 15 C C1B HEM . . . M 3 9.603 49.239 -10.08 0.78 208.43 ? C1B HEM 401 D 1 HETATM 16 C C2B HEM . . . M 3 10.28 47.986 -10.318 0.78 208.43 ? C2B HEM 401 D 1 HETATM 17 C C3B HEM . . . M 3 10.8 47.568 -9.146 0.78 208.43 ? C3B HEM 401 D 1 HETATM 18 C C4B HEM . . . M 3 10.447 48.53 -8.13 0.78 208.43 ? C4B HEM 401 D 1 HETATM 19 C CMB HEM . . . M 3 10.345 47.358 -11.733 0.78 268.43 ? CMB HEM 401 D 1 HETATM 20 C CAB HEM . . . M 3 11.595 46.278 -8.877 0.78 268.43 ? CAB HEM 401 D 1 HETATM 21 C CBB HEM . . . M 3 11.839 45.469 -9.905 0.78 268.43 ? CBB HEM 401 D 1 HETATM 22 C C1C HEM . . . M 3 10.526 49.42 -5.84 0.78 208.43 ? C1C HEM 401 D 1 HETATM 23 C C2C HEM . . . M 3 10.986 49.413 -4.47 0.78 208.43 ? C2C HEM 401 D 1 HETATM 24 C C3C HEM . . . M 3 10.518 50.524 -3.876 0.78 208.43 ? C3C HEM 401 D 1 HETATM 25 C C4C HEM . . . M 3 9.757 51.271 -4.844 0.78 208.43 ? C4C HEM 401 D 1 HETATM 26 C CMC HEM . . . M 3 11.858 48.272 -3.889 0.78 268.43 ? CMC HEM 401 D 1 HETATM 27 C CAC HEM . . . M 3 10.751 50.968 -2.425 0.78 268.43 ? CAC HEM 401 D 1 HETATM 28 C CBC HEM . . . M 3 11.485 50.178 -1.646 0.78 268.43 ? CBC HEM 401 D 1 HETATM 29 C C1D HEM . . . M 3 8.494 53.245 -5.564 0.78 208.43 ? C1D HEM 401 D 1 HETATM 30 C C2D HEM . . . M 3 7.873 54.536 -5.346 0.78 208.43 ? C2D HEM 401 D 1 HETATM 31 C C3D HEM . . . M 3 7.384 54.964 -6.513 0.78 208.43 ? C3D HEM 401 D 1 HETATM 32 C C4D HEM . . . M 3 7.665 53.962 -7.521 0.78 208.43 ? C4D HEM 401 D 1 HETATM 33 C CMD HEM . . . M 3 7.795 55.294 -4.003 0.78 268.43 ? CMD HEM 401 D 1 HETATM 34 C CAD HEM . . . M 3 6.635 56.29 -6.765 0.78 268.43 ? CAD HEM 401 D 1 HETATM 35 C CBD HEM . . . M 3 5.143 56.085 -6.525 0.78 268.43 ? CBD HEM 401 D 1 HETATM 36 C CGD HEM . . . M 3 4.375 57.25 -7.094 0.78 268.43 ? CGD HEM 401 D 1 HETATM 37 O O1D HEM . . . M 3 4.475 58.372 -6.535 0.78 268.43 ? O1D HEM 401 D 1 HETATM 38 O O2D HEM . . . M 3 3.661 57.057 -8.111 0.78 268.43 ? O2D HEM 401 D 1 HETATM 39 N NA HEM . . . M 3 8.307 51.921 -9.633 0.78 208.43 ? NA HEM 401 D 1 HETATM 40 N NB HEM . . . M 3 9.722 49.536 -8.738 0.78 208.43 ? NB HEM 401 D 1 HETATM 41 N NC HEM . . . M 3 9.779 50.565 -6.03 0.78 208.43 ? NC HEM 401 D 1 HETATM 42 N ND HEM . . . M 3 8.345 52.928 -6.903 0.78 208.43 ? ND HEM 401 D 1 HETATM 43 FE FE HEM . . . M 3 8.985 51.201 -7.816 0.78 208.43 2 FE HEM 401 D 1 HETATM 44 H HHB HEM . . . M 3 8.945 49.657 -11.947 0.78 268.43 ? HHB HEM 401 D 1 HETATM 45 H HHC HEM . . . M 3 11.24 47.644 -6.495 0.78 268.43 ? HHC HEM 401 D 1 HETATM 46 H HHD HEM . . . M 3 9.111 52.798 -3.691 0.78 268.43 ? HHD HEM 401 D 1 HETATM 47 H HMA HEM . . . M 3 7.848 50.83 -13.508 0.78 268.43 ? HMA HEM 401 D 1 HETATM 48 H HMAA HEM . . . M 3 7.29 52.297 -13.818 0.78 268.43 ? HMAA HEM 401 D 1 HETATM 49 H HMAB HEM . . . M 3 6.297 51.158 -13.293 0.78 268.43 ? HMAB HEM 401 D 1 HETATM 50 H HAA HEM . . . M 3 5.831 54.733 -11.163 0.78 268.43 ? HAA HEM 401 D 1 HETATM 51 H HAAA HEM . . . M 3 5.383 53.68 -12.259 0.78 268.43 ? HAAA HEM 401 D 1 HETATM 52 H HBA HEM . . . M 3 7.834 54.564 -12.923 0.78 268.43 ? HBA HEM 401 D 1 HETATM 53 H HBAA HEM . . . M 3 6.918 55.831 -12.669 0.78 268.43 ? HBAA HEM 401 D 1 HETATM 54 H HMB HEM . . . M 3 9.828 47.899 -12.351 0.78 268.43 ? HMB HEM 401 D 1 HETATM 55 H HMBA HEM . . . M 3 9.979 46.46 -11.706 0.78 268.43 ? HMBA HEM 401 D 1 HETATM 56 H HMBB HEM . . . M 3 11.268 47.321 -12.03 0.78 268.43 ? HMBB HEM 401 D 1 HETATM 57 H HAB HEM . . . M 3 11.906 46.064 -7.994 0.78 268.43 ? HAB HEM 401 D 1 HETATM 58 H HBB HEM . . . M 3 12.338 44.648 -9.768 0.78 268.43 ? HBB HEM 401 D 1 HETATM 59 H HBBA HEM . . . M 3 11.518 45.699 -10.79 0.78 268.43 ? HBBA HEM 401 D 1 HETATM 60 H HMC HEM . . . M 3 11.9 47.541 -4.525 0.78 268.43 ? HMC HEM 401 D 1 HETATM 61 H HMCA HEM . . . M 3 11.467 47.956 -3.059 0.78 268.43 ? HMCA HEM 401 D 1 HETATM 62 H HMCB HEM . . . M 3 12.753 48.604 -3.718 0.78 268.43 ? HMCB HEM 401 D 1 HETATM 63 H HAC HEM . . . M 3 10.379 51.788 -2.09 0.78 268.43 ? HAC HEM 401 D 1 HETATM 64 H HBC HEM . . . M 3 11.853 49.353 -2.001 0.78 268.43 ? HBC HEM 401 D 1 HETATM 65 H HBCA HEM . . . M 3 11.653 50.426 -0.724 0.78 268.43 ? HBCA HEM 401 D 1 HETATM 66 H HMD HEM . . . M 3 8.659 55.235 -3.544 0.78 268.43 ? HMD HEM 401 D 1 HETATM 67 H HMDA HEM . . . M 3 7.099 54.894 -3.442 0.78 268.43 ? HMDA HEM 401 D 1 HETATM 68 H HMDB HEM . . . M 3 7.579 56.235 -4.171 0.78 268.43 ? HMDB HEM 401 D 1 HETATM 69 H HAD HEM . . . M 3 6.969 56.97 -6.159 0.78 268.43 ? HAD HEM 401 D 1 HETATM 70 H HADA HEM . . . M 3 6.779 56.574 -7.681 0.78 268.43 ? HADA HEM 401 D 1 HETATM 71 H HBD HEM . . . M 3 4.856 55.266 -6.959 0.78 268.43 ? HBD HEM 401 D 1 HETATM 72 H HBDA HEM . . . M 3 4.975 56.022 -5.572 0.78 268.43 ? HBDA HEM 401 D 1 HETATM 73 H HHA HEM . . . M 3 6.862 54.845 -9.156 0.78 268.43 ? HHA HEM 401 D 1 # _model_server_stats.io_time_ms 279 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 188 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 49 _model_server_stats.element_count 73 #