data_7W7F # _model_server_result.job_id M4Ka_CsQPjurwnqffSg62Q _model_server_result.datetime_utc '2024-11-02 16:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2113}' # _entry.id 7W7F # _exptl.entry_id 7W7F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W7F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 1 NAG 4 n D NAG 2 E 2 NAG E 2 NAG 4 n D BMA 3 E 3 BMA E 3 BMA 5 n E NAG 1 F 1 NAG F 1 NAG 5 n E NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 40 B CYS 40 1_555 A SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 50 C CYS 50 1_555 B SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 C SG CYS 911 D CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 72 C CYS 72 1_555 B SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 913 D CYS 913 1_555 C SG CYS 919 D CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 951 D CYS 951 1_555 C SG CYS 960 D CYS 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 1364 D CYS 1364 1_555 C SG CYS 1384 D CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 1726 D CYS 1726 1_555 C SG CYS 1741 D CYS 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 93 B ASN 93 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 110 B ASN 110 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 114 B ASN 114 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 135 B ASN 135 1_555 I C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 339 D ASN 339 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C ND2 ASN 1366 D ASN 1366 1_555 J C1 NAG . D NAG 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 C ND2 ASN 1380 D ASN 1380 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 D O4 NAG . E NAG 2 1_555 D C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale10 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W7F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 6 NAG B 1 304 304 NAG NAG . J 6 NAG D 1 2101 1779 NAG NAG . K 7 6OU D 1 2102 2201 6OU 6OU . L 8 8DE D 1 2103 2101 8DE ICA . M 7 6OU D 1 2104 3001 6OU 6OU . N 7 6OU D 1 2105 3002 6OU 6OU . O 7 6OU D 1 2106 3003 6OU 6OU . P 7 6OU D 1 2107 3004 6OU 6OU . Q 7 6OU D 1 2108 3005 6OU 6OU . R 7 6OU D 1 2109 3006 6OU 6OU . S 7 6OU D 1 2110 3007 6OU 6OU . T 7 6OU D 1 2111 3008 6OU 6OU . U 7 6OU D 1 2112 3009 6OU 6OU . V 9 9Z9 D 1 2113 3010 9Z9 9Z9 . W 7 6OU D 1 2114 3011 6OU 6OU . X 7 6OU D 1 2115 3012 6OU 6OU . Y 7 6OU D 1 2116 3013 6OU 6OU . Z 7 6OU D 1 2117 3014 6OU 6OU . AA 7 6OU D 1 2118 3015 6OU 6OU . BA 7 6OU D 1 2119 3016 6OU 6OU . CA 7 6OU D 1 2120 3017 6OU 6OU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . V 9 118.87 120.196 139.744 1 58.69 ? C01 9Z9 2113 D 1 HETATM 2 C C02 9Z9 . . . V 9 119.605 121.34 140.507 1 58.69 ? C02 9Z9 2113 D 1 HETATM 3 C C03 9Z9 . . . V 9 120.277 122.378 139.256 1 58.69 ? C03 9Z9 2113 D 1 HETATM 4 C C04 9Z9 . . . V 9 119.212 123.016 138.66 1 58.69 ? C04 9Z9 2113 D 1 HETATM 5 C C05 9Z9 . . . V 9 117.779 122.707 139.753 1 58.69 ? C05 9Z9 2113 D 1 HETATM 6 C C06 9Z9 . . . V 9 118.521 122.258 141.102 1 58.69 ? C06 9Z9 2113 D 1 HETATM 7 C C07 9Z9 . . . V 9 118.026 121.896 142.074 1 58.69 ? C07 9Z9 2113 D 1 HETATM 8 C C08 9Z9 . . . V 9 118.983 121.56 142.964 1 58.69 ? C08 9Z9 2113 D 1 HETATM 9 C C09 9Z9 . . . V 9 119.772 120.432 142.438 1 58.69 ? C09 9Z9 2113 D 1 HETATM 10 C C10 9Z9 . . . V 9 120.33 120.752 141.323 1 58.69 ? C10 9Z9 2113 D 1 HETATM 11 C C11 9Z9 . . . V 9 118.312 121.179 144.534 1 58.69 ? C11 9Z9 2113 D 1 HETATM 12 C C12 9Z9 . . . V 9 117.719 119.747 144.474 1 58.69 ? C12 9Z9 2113 D 1 HETATM 13 C C13 9Z9 . . . V 9 117.48 121.918 144.863 1 58.69 ? C13 9Z9 2113 D 1 HETATM 14 C C14 9Z9 . . . V 9 116.653 122.332 143.959 1 58.69 ? C14 9Z9 2113 D 1 HETATM 15 C C15 9Z9 . . . V 9 117.259 122.68 142.481 1 58.69 ? C15 9Z9 2113 D 1 HETATM 16 C C16 9Z9 . . . V 9 117.026 121.732 146.404 1 58.69 ? C16 9Z9 2113 D 1 HETATM 17 C C17 9Z9 . . . V 9 118.277 121.795 147.393 1 58.69 ? C17 9Z9 2113 D 1 HETATM 18 C C18 9Z9 . . . V 9 119.195 120.949 147.046 1 58.69 ? C18 9Z9 2113 D 1 HETATM 19 C C19 9Z9 . . . V 9 119.633 121.174 145.636 1 58.69 ? C19 9Z9 2113 D 1 HETATM 20 O O20 9Z9 . . . V 9 117.822 121.478 148.818 1 58.69 ? O20 9Z9 2113 D 1 HETATM 21 C C21 9Z9 . . . V 9 116.987 120.303 148.925 1 58.69 ? C21 9Z9 2113 D 1 HETATM 22 C C22 9Z9 . . . V 9 115.771 120.632 149.815 1 58.69 ? C22 9Z9 2113 D 1 HETATM 23 O O72 9Z9 . . . V 9 119.094 122.417 137.243 1 58.69 ? O72 9Z9 2113 D 1 HETATM 24 C C73 9Z9 . . . V 9 120.024 122.258 136.959 1 58.69 ? C73 9Z9 2113 D 1 HETATM 25 C C74 9Z9 . . . V 9 120.814 121.784 138.419 1 58.69 ? C74 9Z9 2113 D 1 HETATM 26 C C75 9Z9 . . . V 9 122.394 122.235 138.346 1 58.69 ? C75 9Z9 2113 D 1 HETATM 27 C C76 9Z9 . . . V 9 120.092 121.4 136.271 1 58.69 ? C76 9Z9 2113 D 1 HETATM 28 C C77 9Z9 . . . V 9 120.32 121.73 134.829 1 58.69 ? C77 9Z9 2113 D 1 HETATM 29 C C78 9Z9 . . . V 9 121.232 122.622 134.668 1 58.69 ? C78 9Z9 2113 D 1 HETATM 30 C C79 9Z9 . . . V 9 120.909 123.581 135.163 1 58.69 ? C79 9Z9 2113 D 1 HETATM 31 O O80 9Z9 . . . V 9 120.605 123.373 136.593 1 58.69 ? O80 9Z9 2113 D 1 HETATM 32 C C81 9Z9 . . . V 9 121.482 122.938 132.804 1 58.69 ? C81 9Z9 2113 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #