data_7W7F # _model_server_result.job_id 9M99D03xzClNPape6n5_bg _model_server_result.datetime_utc '2024-11-22 11:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":2117}' # _entry.id 7W7F # _exptl.entry_id 7W7F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W7F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 W N N ? 7 X N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N ? 7 CA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 1 NAG 4 n D NAG 2 E 2 NAG E 2 NAG 4 n D BMA 3 E 3 BMA E 3 BMA 5 n E NAG 1 F 1 NAG F 1 NAG 5 n E NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 40 B CYS 40 1_555 A SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 50 C CYS 50 1_555 B SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 C SG CYS 911 D CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 72 C CYS 72 1_555 B SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 913 D CYS 913 1_555 C SG CYS 919 D CYS 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 951 D CYS 951 1_555 C SG CYS 960 D CYS 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 1364 D CYS 1364 1_555 C SG CYS 1384 D CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 1726 D CYS 1726 1_555 C SG CYS 1741 D CYS 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 93 B ASN 93 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 110 B ASN 110 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 114 B ASN 114 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 135 B ASN 135 1_555 I C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 339 D ASN 339 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C ND2 ASN 1366 D ASN 1366 1_555 J C1 NAG . D NAG 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 C ND2 ASN 1380 D ASN 1380 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 D O4 NAG . E NAG 2 1_555 D C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale10 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 7W7F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 6 NAG B 1 304 304 NAG NAG . J 6 NAG D 1 2101 1779 NAG NAG . K 7 6OU D 1 2102 2201 6OU 6OU . L 8 8DE D 1 2103 2101 8DE ICA . M 7 6OU D 1 2104 3001 6OU 6OU . N 7 6OU D 1 2105 3002 6OU 6OU . O 7 6OU D 1 2106 3003 6OU 6OU . P 7 6OU D 1 2107 3004 6OU 6OU . Q 7 6OU D 1 2108 3005 6OU 6OU . R 7 6OU D 1 2109 3006 6OU 6OU . S 7 6OU D 1 2110 3007 6OU 6OU . T 7 6OU D 1 2111 3008 6OU 6OU . U 7 6OU D 1 2112 3009 6OU 6OU . V 9 9Z9 D 1 2113 3010 9Z9 9Z9 . W 7 6OU D 1 2114 3011 6OU 6OU . X 7 6OU D 1 2115 3012 6OU 6OU . Y 7 6OU D 1 2116 3013 6OU 6OU . Z 7 6OU D 1 2117 3014 6OU 6OU . AA 7 6OU D 1 2118 3015 6OU 6OU . BA 7 6OU D 1 2119 3016 6OU 6OU . CA 7 6OU D 1 2120 3017 6OU 6OU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C07 6OU . . . Z 7 131.684 109.776 125.587 1 71.39 ? C07 6OU 2117 D 1 HETATM 2 C C08 6OU . . . Z 7 131.505 108.562 124.68 1 71.39 ? C08 6OU 2117 D 1 HETATM 3 C C09 6OU . . . Z 7 131.097 109.033 123.288 1 71.39 ? C09 6OU 2117 D 1 HETATM 4 C C10 6OU . . . Z 7 130.77 107.823 122.417 1 71.39 ? C10 6OU 2117 D 1 HETATM 5 C C11 6OU . . . Z 7 131.046 108.161 120.954 1 71.39 ? C11 6OU 2117 D 1 HETATM 6 C C12 6OU . . . Z 7 129.734 108.16 120.176 1 71.39 ? C12 6OU 2117 D 1 HETATM 7 C C13 6OU . . . Z 7 130.025 108.42 118.702 1 71.39 ? C13 6OU 2117 D 1 HETATM 8 C C14 6OU . . . Z 7 128.761 108.175 117.883 1 71.39 ? C14 6OU 2117 D 1 HETATM 9 C C15 6OU . . . Z 7 129.135 108.013 116.411 1 71.39 ? C15 6OU 2117 D 1 HETATM 10 C C16 6OU . . . Z 7 127.918 107.54 115.62 1 71.39 ? C16 6OU 2117 D 1 HETATM 11 O O17 6OU . . . Z 7 127.621 106.394 115.616 1 71.39 ? O17 6OU 2117 D 1 HETATM 12 O O18 6OU . . . Z 7 127.155 108.462 114.897 1 71.39 ? O18 6OU 2117 D 1 HETATM 13 C C19 6OU . . . Z 7 127.915 109.293 114.067 1 71.39 ? C19 6OU 2117 D 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 725 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #