data_7W8X
#
_model_server_result.job_id            KTKTT1fhNnez2hdp71dZtA 
_model_server_result.datetime_utc      '2024-12-12 18:32:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w8x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7W8X 
#
_exptl.entry_id    7W8X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              262.158 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYLALLYL S-THIOLODIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.934 
_cell.angle_gamma         90 
_cell.entry_id            7W8X 
_cell.length_a            49.675 
_cell.length_b            44.742 
_cell.length_c            78.918 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W8X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H12 O6 P2 S' 
_chem_comp.formula_weight    262.158 
_chem_comp.id                DST 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYLALLYL S-THIOLODIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DMASPP;DMAPP;DMADP;Dimethylallyl pyrophosphate;dimethylallyl diphosphate;isoprenyl pyrophosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 P1 DST sing 114 n n 
O4 HO4 DST sing 115 n n 
P1 O6 DST sing 116 n n 
P1 O5 DST doub 117 n n 
P1 O2 DST sing 118 n n 
O6 HO6 DST sing 119 n n 
O2 P3 DST sing 120 n n 
P3 O8 DST sing 121 n n 
P3 O7 DST doub 122 n n 
P3 S9 DST sing 123 n n 
O8 HO8 DST sing 124 n n 
S9 C10 DST sing 125 n n 
C10 C11 DST sing 126 n n 
C10 H101 DST sing 127 n n 
C10 H102 DST sing 128 n n 
C11 C12 DST doub 129 n n 
C11 H111 DST sing 130 n n 
C12 C13 DST sing 131 n n 
C12 C14 DST sing 132 n n 
C13 H131 DST sing 133 n n 
C13 H132 DST sing 134 n n 
C13 H133 DST sing 135 n n 
C14 H141 DST sing 136 n n 
C14 H142 DST sing 137 n n 
C14 H143 DST sing 138 n n 
#
_atom_sites.entry_id                     7W8X 
_atom_sites.fract_transf_matrix[1][1]    0.020131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002448 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012765 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DST A 1 401 401 DST 6C7 . 
C 3 SO4 A 1 402 601 SO4 SO4 . 
D 4 8IK A 1 403 501 8IK 6MW . 
E 5 HOH A 1 501 150 HOH HOH . 
E 5 HOH A 2 502 201 HOH HOH . 
E 5 HOH A 3 503 86 HOH HOH . 
E 5 HOH A 4 504 204 HOH HOH . 
E 5 HOH A 5 505 209 HOH HOH . 
E 5 HOH A 6 506 202 HOH HOH . 
E 5 HOH A 7 507 103 HOH HOH . 
E 5 HOH A 8 508 52 HOH HOH . 
E 5 HOH A 9 509 238 HOH HOH . 
E 5 HOH A 10 510 151 HOH HOH . 
E 5 HOH A 11 511 154 HOH HOH . 
E 5 HOH A 12 512 49 HOH HOH . 
E 5 HOH A 13 513 243 HOH HOH . 
E 5 HOH A 14 514 191 HOH HOH . 
E 5 HOH A 15 515 198 HOH HOH . 
E 5 HOH A 16 516 164 HOH HOH . 
E 5 HOH A 17 517 17 HOH HOH . 
E 5 HOH A 18 518 144 HOH HOH . 
E 5 HOH A 19 519 100 HOH HOH . 
E 5 HOH A 20 520 245 HOH HOH . 
E 5 HOH A 21 521 155 HOH HOH . 
E 5 HOH A 22 522 148 HOH HOH . 
E 5 HOH A 23 523 121 HOH HOH . 
E 5 HOH A 24 524 123 HOH HOH . 
E 5 HOH A 25 525 24 HOH HOH . 
E 5 HOH A 26 526 174 HOH HOH . 
E 5 HOH A 27 527 110 HOH HOH . 
E 5 HOH A 28 528 140 HOH HOH . 
E 5 HOH A 29 529 8 HOH HOH . 
E 5 HOH A 30 530 114 HOH HOH . 
E 5 HOH A 31 531 22 HOH HOH . 
E 5 HOH A 32 532 255 HOH HOH . 
E 5 HOH A 33 533 132 HOH HOH . 
E 5 HOH A 34 534 81 HOH HOH . 
E 5 HOH A 35 535 173 HOH HOH . 
E 5 HOH A 36 536 95 HOH HOH . 
E 5 HOH A 37 537 96 HOH HOH . 
E 5 HOH A 38 538 73 HOH HOH . 
E 5 HOH A 39 539 127 HOH HOH . 
E 5 HOH A 40 540 115 HOH HOH . 
E 5 HOH A 41 541 63 HOH HOH . 
E 5 HOH A 42 542 60 HOH HOH . 
E 5 HOH A 43 543 113 HOH HOH . 
E 5 HOH A 44 544 109 HOH HOH . 
E 5 HOH A 45 545 131 HOH HOH . 
E 5 HOH A 46 546 27 HOH HOH . 
E 5 HOH A 47 547 20 HOH HOH . 
E 5 HOH A 48 548 31 HOH HOH . 
E 5 HOH A 49 549 129 HOH HOH . 
E 5 HOH A 50 550 19 HOH HOH . 
E 5 HOH A 51 551 4 HOH HOH . 
E 5 HOH A 52 552 30 HOH HOH . 
E 5 HOH A 53 553 70 HOH HOH . 
E 5 HOH A 54 554 88 HOH HOH . 
E 5 HOH A 55 555 212 HOH HOH . 
E 5 HOH A 56 556 187 HOH HOH . 
E 5 HOH A 57 557 11 HOH HOH . 
E 5 HOH A 58 558 236 HOH HOH . 
E 5 HOH A 59 559 37 HOH HOH . 
E 5 HOH A 60 560 33 HOH HOH . 
E 5 HOH A 61 561 39 HOH HOH . 
E 5 HOH A 62 562 12 HOH HOH . 
E 5 HOH A 63 563 13 HOH HOH . 
E 5 HOH A 64 564 116 HOH HOH . 
E 5 HOH A 65 565 32 HOH HOH . 
E 5 HOH A 66 566 14 HOH HOH . 
E 5 HOH A 67 567 46 HOH HOH . 
E 5 HOH A 68 568 55 HOH HOH . 
E 5 HOH A 69 569 57 HOH HOH . 
E 5 HOH A 70 570 6 HOH HOH . 
E 5 HOH A 71 571 211 HOH HOH . 
E 5 HOH A 72 572 66 HOH HOH . 
E 5 HOH A 73 573 79 HOH HOH . 
E 5 HOH A 74 574 9 HOH HOH . 
E 5 HOH A 75 575 67 HOH HOH . 
E 5 HOH A 76 576 128 HOH HOH . 
E 5 HOH A 77 577 244 HOH HOH . 
E 5 HOH A 78 578 1 HOH HOH . 
E 5 HOH A 79 579 134 HOH HOH . 
E 5 HOH A 80 580 10 HOH HOH . 
E 5 HOH A 81 581 190 HOH HOH . 
E 5 HOH A 82 582 78 HOH HOH . 
E 5 HOH A 83 583 16 HOH HOH . 
E 5 HOH A 84 584 50 HOH HOH . 
E 5 HOH A 85 585 234 HOH HOH . 
E 5 HOH A 86 586 216 HOH HOH . 
E 5 HOH A 87 587 227 HOH HOH . 
E 5 HOH A 88 588 176 HOH HOH . 
E 5 HOH A 89 589 28 HOH HOH . 
E 5 HOH A 90 590 122 HOH HOH . 
E 5 HOH A 91 591 68 HOH HOH . 
E 5 HOH A 92 592 223 HOH HOH . 
E 5 HOH A 93 593 5 HOH HOH . 
E 5 HOH A 94 594 61 HOH HOH . 
E 5 HOH A 95 595 3 HOH HOH . 
E 5 HOH A 96 596 119 HOH HOH . 
E 5 HOH A 97 597 135 HOH HOH . 
E 5 HOH A 98 598 54 HOH HOH . 
E 5 HOH A 99 599 247 HOH HOH . 
E 5 HOH A 100 600 189 HOH HOH . 
E 5 HOH A 101 601 44 HOH HOH . 
E 5 HOH A 102 602 43 HOH HOH . 
E 5 HOH A 103 603 84 HOH HOH . 
E 5 HOH A 104 604 21 HOH HOH . 
E 5 HOH A 105 605 92 HOH HOH . 
E 5 HOH A 106 606 185 HOH HOH . 
E 5 HOH A 107 607 230 HOH HOH . 
E 5 HOH A 108 608 65 HOH HOH . 
E 5 HOH A 109 609 18 HOH HOH . 
E 5 HOH A 110 610 138 HOH HOH . 
E 5 HOH A 111 611 23 HOH HOH . 
E 5 HOH A 112 612 71 HOH HOH . 
E 5 HOH A 113 613 75 HOH HOH . 
E 5 HOH A 114 614 2 HOH HOH . 
E 5 HOH A 115 615 90 HOH HOH . 
E 5 HOH A 116 616 87 HOH HOH . 
E 5 HOH A 117 617 141 HOH HOH . 
E 5 HOH A 118 618 7 HOH HOH . 
E 5 HOH A 119 619 224 HOH HOH . 
E 5 HOH A 120 620 58 HOH HOH . 
E 5 HOH A 121 621 80 HOH HOH . 
E 5 HOH A 122 622 171 HOH HOH . 
E 5 HOH A 123 623 69 HOH HOH . 
E 5 HOH A 124 624 120 HOH HOH . 
E 5 HOH A 125 625 45 HOH HOH . 
E 5 HOH A 126 626 56 HOH HOH . 
E 5 HOH A 127 627 48 HOH HOH . 
E 5 HOH A 128 628 111 HOH HOH . 
E 5 HOH A 129 629 77 HOH HOH . 
E 5 HOH A 130 630 136 HOH HOH . 
E 5 HOH A 131 631 112 HOH HOH . 
E 5 HOH A 132 632 35 HOH HOH . 
E 5 HOH A 133 633 64 HOH HOH . 
E 5 HOH A 134 634 104 HOH HOH . 
E 5 HOH A 135 635 214 HOH HOH . 
E 5 HOH A 136 636 231 HOH HOH . 
E 5 HOH A 137 637 139 HOH HOH . 
E 5 HOH A 138 638 26 HOH HOH . 
E 5 HOH A 139 639 218 HOH HOH . 
E 5 HOH A 140 640 196 HOH HOH . 
E 5 HOH A 141 641 101 HOH HOH . 
E 5 HOH A 142 642 117 HOH HOH . 
E 5 HOH A 143 643 41 HOH HOH . 
E 5 HOH A 144 644 192 HOH HOH . 
E 5 HOH A 145 645 206 HOH HOH . 
E 5 HOH A 146 646 130 HOH HOH . 
E 5 HOH A 147 647 106 HOH HOH . 
E 5 HOH A 148 648 249 HOH HOH . 
E 5 HOH A 149 649 193 HOH HOH . 
E 5 HOH A 150 650 83 HOH HOH . 
E 5 HOH A 151 651 62 HOH HOH . 
E 5 HOH A 152 652 72 HOH HOH . 
E 5 HOH A 153 653 29 HOH HOH . 
E 5 HOH A 154 654 105 HOH HOH . 
E 5 HOH A 155 655 159 HOH HOH . 
E 5 HOH A 156 656 137 HOH HOH . 
E 5 HOH A 157 657 89 HOH HOH . 
E 5 HOH A 158 658 76 HOH HOH . 
E 5 HOH A 159 659 142 HOH HOH . 
E 5 HOH A 160 660 34 HOH HOH . 
E 5 HOH A 161 661 186 HOH HOH . 
E 5 HOH A 162 662 241 HOH HOH . 
E 5 HOH A 163 663 179 HOH HOH . 
E 5 HOH A 164 664 166 HOH HOH . 
E 5 HOH A 165 665 252 HOH HOH . 
E 5 HOH A 166 666 147 HOH HOH . 
E 5 HOH A 167 667 82 HOH HOH . 
E 5 HOH A 168 668 225 HOH HOH . 
E 5 HOH A 169 669 149 HOH HOH . 
E 5 HOH A 170 670 94 HOH HOH . 
E 5 HOH A 171 671 107 HOH HOH . 
E 5 HOH A 172 672 143 HOH HOH . 
E 5 HOH A 173 673 251 HOH HOH . 
E 5 HOH A 174 674 213 HOH HOH . 
E 5 HOH A 175 675 15 HOH HOH . 
E 5 HOH A 176 676 226 HOH HOH . 
E 5 HOH A 177 677 53 HOH HOH . 
E 5 HOH A 178 678 258 HOH HOH . 
E 5 HOH A 179 679 118 HOH HOH . 
E 5 HOH A 180 680 253 HOH HOH . 
E 5 HOH A 181 681 195 HOH HOH . 
E 5 HOH A 182 682 205 HOH HOH . 
E 5 HOH A 183 683 172 HOH HOH . 
E 5 HOH A 184 684 200 HOH HOH . 
E 5 HOH A 185 685 237 HOH HOH . 
E 5 HOH A 186 686 199 HOH HOH . 
E 5 HOH A 187 687 229 HOH HOH . 
E 5 HOH A 188 688 254 HOH HOH . 
E 5 HOH A 189 689 157 HOH HOH . 
E 5 HOH A 190 690 235 HOH HOH . 
E 5 HOH A 191 691 183 HOH HOH . 
E 5 HOH A 192 692 215 HOH HOH . 
E 5 HOH A 193 693 99 HOH HOH . 
E 5 HOH A 194 694 133 HOH HOH . 
E 5 HOH A 195 695 203 HOH HOH . 
E 5 HOH A 196 696 197 HOH HOH . 
E 5 HOH A 197 697 126 HOH HOH . 
E 5 HOH A 198 698 156 HOH HOH . 
E 5 HOH A 199 699 124 HOH HOH . 
E 5 HOH A 200 700 153 HOH HOH . 
E 5 HOH A 201 701 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 DST . . . B 2 63.426 8.096 25.437 1 64.6 ? O4 DST 401 A 1 
HETATM 2 P P1 DST . . . B 2 61.984 7.646 25.427 1 56.19 ? P1 DST 401 A 1 
HETATM 3 O O6 DST . . . B 2 61.592 7.204 26.817 1 67.98 ? O6 DST 401 A 1 
HETATM 4 O O5 DST . . . B 2 61.093 8.79 25.007 1 66.86 ? O5 DST 401 A 1 
HETATM 5 O O2 DST . . . B 2 61.797 6.387 24.379 1 68.07 ? O2 DST 401 A 1 
HETATM 6 P P3 DST . . . B 2 63.021 5.693 23.515 1 100.49 ? P3 DST 401 A 1 
HETATM 7 O O8 DST . . . B 2 64.031 5.086 24.463 1 71.68 ? O8 DST 401 A 1 
HETATM 8 O O7 DST . . . B 2 63.702 6.736 22.654 1 72.44 ? O7 DST 401 A 1 
HETATM 9 S S9 DST . . . B 2 62.192 4.185 22.267 1 64.38 ? S9 DST 401 A 1 
HETATM 10 C C10 DST . . . B 2 62.952 2.555 22.53 1 45.32 ? C10 DST 401 A 1 
HETATM 11 C C11 DST . . . B 2 63.931 2.24 21.401 1 40.48 ? C11 DST 401 A 1 
HETATM 12 C C12 DST . . . B 2 64.541 1.072 21.388 1 41.91 ? C12 DST 401 A 1 
HETATM 13 C C13 DST . . . B 2 65.528 0.723 20.283 1 41.32 ? C13 DST 401 A 1 
HETATM 14 C C14 DST . . . B 2 64.257 0.054 22.489 1 37.93 ? C14 DST 401 A 1 
HETATM 15 H H101 DST . . . B 2 62.259 1.878 22.552 1 54.38 ? H101 DST 401 A 1 
HETATM 16 H H102 DST . . . B 2 63.429 2.557 23.376 1 54.38 ? H102 DST 401 A 1 
HETATM 17 H H111 DST . . . B 2 64.095 2.864 20.731 1 48.58 ? H111 DST 401 A 1 
HETATM 18 H H131 DST . . . B 2 66.431 0.757 20.634 1 49.58 ? H131 DST 401 A 1 
HETATM 19 H H132 DST . . . B 2 65.342 -0.171 19.954 1 49.58 ? H132 DST 401 A 1 
HETATM 20 H H133 DST . . . B 2 65.439 1.359 19.556 1 49.58 ? H133 DST 401 A 1 
HETATM 21 H H141 DST . . . B 2 63.33 -0.226 22.439 1 45.52 ? H141 DST 401 A 1 
HETATM 22 H H142 DST . . . B 2 64.427 0.459 23.354 1 45.52 ? H142 DST 401 A 1 
HETATM 23 H H143 DST . . . B 2 64.835 -0.717 22.374 1 45.52 ? H143 DST 401 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           495 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#