data_7W8Y # _model_server_result.job_id D5SdZsJWHZ3HdDO47k-nCw _model_server_result.datetime_utc '2025-06-21 17:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7W8Y # _exptl.entry_id 7W8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.252 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-L-tryptophan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.325 _cell.angle_gamma 90 _cell.entry_id 7W8Y _cell.length_a 49.521 _cell.length_b 44.714 _cell.length_c 78.384 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 207 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 223 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id O7 _struct_conn.ptnr2_label_comp_id DST _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DST _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.301 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H14 N2 O2' _chem_comp.formula_weight 218.252 _chem_comp.id E9M _chem_comp.mon_nstd_flag n _chem_comp.name N-methyl-L-tryptophan _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA E9M sing 125 n n C O E9M doub 126 n n CA N E9M sing 127 n n CA CB E9M sing 128 n n N CN2 E9M sing 129 n n CE3 CZ3 E9M doub 130 n y CE3 CD2 E9M sing 131 n y CB CG E9M sing 132 n n CZ3 CH2 E9M sing 133 n y CD2 CG E9M sing 134 n y CD2 CE2 E9M doub 135 n y CG CD1 E9M doub 136 n y CH2 CZ2 E9M doub 137 n y CE2 CZ2 E9M sing 138 n y CE2 NE1 E9M sing 139 n y CD1 NE1 E9M sing 140 n y C OXT E9M sing 141 n n N H E9M sing 142 n n CA HA E9M sing 143 n n CD1 HD1 E9M sing 144 n n CB HB3 E9M sing 145 n n CB HB2 E9M sing 146 n n CE3 HE3 E9M sing 147 n n NE1 HE1 E9M sing 148 n n CZ3 HZ3 E9M sing 149 n n CZ2 HZ2 E9M sing 150 n n CH2 HH2 E9M sing 151 n n CN2 HN3 E9M sing 152 n n CN2 HN1 E9M sing 153 n n CN2 HN2 E9M sing 154 n n OXT HXT E9M sing 155 n n # _atom_sites.entry_id 7W8Y _atom_sites.fract_transf_matrix[1][1] 0.020193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DST A 1 401 401 DST 6C7 . C 3 SO4 A 1 402 601 SO4 SO4 . D 4 TRS A 1 403 701 TRS TRS . E 5 DTT A 1 404 801 DTT DTT . F 6 E9M A 1 405 901 E9M E9M . G 7 HOH A 1 501 143 HOH HOH . G 7 HOH A 2 502 206 HOH HOH . G 7 HOH A 3 503 225 HOH HOH . G 7 HOH A 4 504 98 HOH HOH . G 7 HOH A 5 505 155 HOH HOH . G 7 HOH A 6 506 35 HOH HOH . G 7 HOH A 7 507 123 HOH HOH . G 7 HOH A 8 508 95 HOH HOH . G 7 HOH A 9 509 149 HOH HOH . G 7 HOH A 10 510 36 HOH HOH . G 7 HOH A 11 511 215 HOH HOH . G 7 HOH A 12 512 90 HOH HOH . G 7 HOH A 13 513 138 HOH HOH . G 7 HOH A 14 514 227 HOH HOH . G 7 HOH A 15 515 161 HOH HOH . G 7 HOH A 16 516 135 HOH HOH . G 7 HOH A 17 517 234 HOH HOH . G 7 HOH A 18 518 194 HOH HOH . G 7 HOH A 19 519 164 HOH HOH . G 7 HOH A 20 520 198 HOH HOH . G 7 HOH A 21 521 10 HOH HOH . G 7 HOH A 22 522 163 HOH HOH . G 7 HOH A 23 523 101 HOH HOH . G 7 HOH A 24 524 114 HOH HOH . G 7 HOH A 25 525 200 HOH HOH . G 7 HOH A 26 526 113 HOH HOH . G 7 HOH A 27 527 6 HOH HOH . G 7 HOH A 28 528 11 HOH HOH . G 7 HOH A 29 529 181 HOH HOH . G 7 HOH A 30 530 75 HOH HOH . G 7 HOH A 31 531 102 HOH HOH . G 7 HOH A 32 532 39 HOH HOH . G 7 HOH A 33 533 58 HOH HOH . G 7 HOH A 34 534 249 HOH HOH . G 7 HOH A 35 535 28 HOH HOH . G 7 HOH A 36 536 96 HOH HOH . G 7 HOH A 37 537 204 HOH HOH . G 7 HOH A 38 538 76 HOH HOH . G 7 HOH A 39 539 223 HOH HOH . G 7 HOH A 40 540 12 HOH HOH . G 7 HOH A 41 541 158 HOH HOH . G 7 HOH A 42 542 51 HOH HOH . G 7 HOH A 43 543 27 HOH HOH . G 7 HOH A 44 544 110 HOH HOH . G 7 HOH A 45 545 63 HOH HOH . G 7 HOH A 46 546 64 HOH HOH . G 7 HOH A 47 547 9 HOH HOH . G 7 HOH A 48 548 65 HOH HOH . G 7 HOH A 49 549 77 HOH HOH . G 7 HOH A 50 550 213 HOH HOH . G 7 HOH A 51 551 62 HOH HOH . G 7 HOH A 52 552 61 HOH HOH . G 7 HOH A 53 553 25 HOH HOH . G 7 HOH A 54 554 8 HOH HOH . G 7 HOH A 55 555 41 HOH HOH . G 7 HOH A 56 556 162 HOH HOH . G 7 HOH A 57 557 112 HOH HOH . G 7 HOH A 58 558 145 HOH HOH . G 7 HOH A 59 559 81 HOH HOH . G 7 HOH A 60 560 5 HOH HOH . G 7 HOH A 61 561 147 HOH HOH . G 7 HOH A 62 562 156 HOH HOH . G 7 HOH A 63 563 14 HOH HOH . G 7 HOH A 64 564 142 HOH HOH . G 7 HOH A 65 565 37 HOH HOH . G 7 HOH A 66 566 78 HOH HOH . G 7 HOH A 67 567 66 HOH HOH . G 7 HOH A 68 568 191 HOH HOH . G 7 HOH A 69 569 29 HOH HOH . G 7 HOH A 70 570 2 HOH HOH . G 7 HOH A 71 571 17 HOH HOH . G 7 HOH A 72 572 19 HOH HOH . G 7 HOH A 73 573 21 HOH HOH . G 7 HOH A 74 574 72 HOH HOH . G 7 HOH A 75 575 117 HOH HOH . G 7 HOH A 76 576 222 HOH HOH . G 7 HOH A 77 577 54 HOH HOH . G 7 HOH A 78 578 154 HOH HOH . G 7 HOH A 79 579 53 HOH HOH . G 7 HOH A 80 580 106 HOH HOH . G 7 HOH A 81 581 210 HOH HOH . G 7 HOH A 82 582 126 HOH HOH . G 7 HOH A 83 583 4 HOH HOH . G 7 HOH A 84 584 34 HOH HOH . G 7 HOH A 85 585 50 HOH HOH . G 7 HOH A 86 586 23 HOH HOH . G 7 HOH A 87 587 49 HOH HOH . G 7 HOH A 88 588 22 HOH HOH . G 7 HOH A 89 589 30 HOH HOH . G 7 HOH A 90 590 24 HOH HOH . G 7 HOH A 91 591 42 HOH HOH . G 7 HOH A 92 592 89 HOH HOH . G 7 HOH A 93 593 125 HOH HOH . G 7 HOH A 94 594 86 HOH HOH . G 7 HOH A 95 595 151 HOH HOH . G 7 HOH A 96 596 7 HOH HOH . G 7 HOH A 97 597 244 HOH HOH . G 7 HOH A 98 598 20 HOH HOH . G 7 HOH A 99 599 241 HOH HOH . G 7 HOH A 100 600 71 HOH HOH . G 7 HOH A 101 601 128 HOH HOH . G 7 HOH A 102 602 67 HOH HOH . G 7 HOH A 103 603 186 HOH HOH . G 7 HOH A 104 604 74 HOH HOH . G 7 HOH A 105 605 120 HOH HOH . G 7 HOH A 106 606 178 HOH HOH . G 7 HOH A 107 607 13 HOH HOH . G 7 HOH A 108 608 68 HOH HOH . G 7 HOH A 109 609 18 HOH HOH . G 7 HOH A 110 610 93 HOH HOH . G 7 HOH A 111 611 108 HOH HOH . G 7 HOH A 112 612 173 HOH HOH . G 7 HOH A 113 613 3 HOH HOH . G 7 HOH A 114 614 45 HOH HOH . G 7 HOH A 115 615 144 HOH HOH . G 7 HOH A 116 616 32 HOH HOH . G 7 HOH A 117 617 216 HOH HOH . G 7 HOH A 118 618 228 HOH HOH . G 7 HOH A 119 619 92 HOH HOH . G 7 HOH A 120 620 40 HOH HOH . G 7 HOH A 121 621 70 HOH HOH . G 7 HOH A 122 622 103 HOH HOH . G 7 HOH A 123 623 59 HOH HOH . G 7 HOH A 124 624 152 HOH HOH . G 7 HOH A 125 625 118 HOH HOH . G 7 HOH A 126 626 94 HOH HOH . G 7 HOH A 127 627 115 HOH HOH . G 7 HOH A 128 628 84 HOH HOH . G 7 HOH A 129 629 104 HOH HOH . G 7 HOH A 130 630 202 HOH HOH . G 7 HOH A 131 631 230 HOH HOH . G 7 HOH A 132 632 91 HOH HOH . G 7 HOH A 133 633 122 HOH HOH . G 7 HOH A 134 634 137 HOH HOH . G 7 HOH A 135 635 26 HOH HOH . G 7 HOH A 136 636 97 HOH HOH . G 7 HOH A 137 637 217 HOH HOH . G 7 HOH A 138 638 47 HOH HOH . G 7 HOH A 139 639 139 HOH HOH . G 7 HOH A 140 640 46 HOH HOH . G 7 HOH A 141 641 141 HOH HOH . G 7 HOH A 142 642 150 HOH HOH . G 7 HOH A 143 643 247 HOH HOH . G 7 HOH A 144 644 99 HOH HOH . G 7 HOH A 145 645 196 HOH HOH . G 7 HOH A 146 646 235 HOH HOH . G 7 HOH A 147 647 208 HOH HOH . G 7 HOH A 148 648 83 HOH HOH . G 7 HOH A 149 649 189 HOH HOH . G 7 HOH A 150 650 185 HOH HOH . G 7 HOH A 151 651 55 HOH HOH . G 7 HOH A 152 652 31 HOH HOH . G 7 HOH A 153 653 44 HOH HOH . G 7 HOH A 154 654 105 HOH HOH . G 7 HOH A 155 655 205 HOH HOH . G 7 HOH A 156 656 15 HOH HOH . G 7 HOH A 157 657 60 HOH HOH . G 7 HOH A 158 658 33 HOH HOH . G 7 HOH A 159 659 87 HOH HOH . G 7 HOH A 160 660 132 HOH HOH . G 7 HOH A 161 661 245 HOH HOH . G 7 HOH A 162 662 250 HOH HOH . G 7 HOH A 163 663 69 HOH HOH . G 7 HOH A 164 664 226 HOH HOH . G 7 HOH A 165 665 79 HOH HOH . G 7 HOH A 166 666 124 HOH HOH . G 7 HOH A 167 667 88 HOH HOH . G 7 HOH A 168 668 133 HOH HOH . G 7 HOH A 169 669 190 HOH HOH . G 7 HOH A 170 670 174 HOH HOH . G 7 HOH A 171 671 239 HOH HOH . G 7 HOH A 172 672 242 HOH HOH . G 7 HOH A 173 673 16 HOH HOH . G 7 HOH A 174 674 100 HOH HOH . G 7 HOH A 175 675 183 HOH HOH . G 7 HOH A 176 676 220 HOH HOH . G 7 HOH A 177 677 214 HOH HOH . G 7 HOH A 178 678 121 HOH HOH . G 7 HOH A 179 679 107 HOH HOH . G 7 HOH A 180 680 167 HOH HOH . G 7 HOH A 181 681 119 HOH HOH . G 7 HOH A 182 682 134 HOH HOH . G 7 HOH A 183 683 82 HOH HOH . G 7 HOH A 184 684 153 HOH HOH . G 7 HOH A 185 685 170 HOH HOH . G 7 HOH A 186 686 127 HOH HOH . G 7 HOH A 187 687 240 HOH HOH . G 7 HOH A 188 688 248 HOH HOH . G 7 HOH A 189 689 38 HOH HOH . G 7 HOH A 190 690 207 HOH HOH . G 7 HOH A 191 691 165 HOH HOH . G 7 HOH A 192 692 177 HOH HOH . G 7 HOH A 193 693 130 HOH HOH . G 7 HOH A 194 694 246 HOH HOH . G 7 HOH A 195 695 169 HOH HOH . G 7 HOH A 196 696 116 HOH HOH . G 7 HOH A 197 697 179 HOH HOH . G 7 HOH A 198 698 188 HOH HOH . G 7 HOH A 199 699 224 HOH HOH . G 7 HOH A 200 700 85 HOH HOH . G 7 HOH A 201 701 201 HOH HOH . G 7 HOH A 202 702 199 HOH HOH . G 7 HOH A 203 703 187 HOH HOH . G 7 HOH A 204 704 192 HOH HOH . G 7 HOH A 205 705 229 HOH HOH . G 7 HOH A 206 706 195 HOH HOH . G 7 HOH A 207 707 184 HOH HOH . G 7 HOH A 208 708 203 HOH HOH . G 7 HOH A 209 709 148 HOH HOH . G 7 HOH A 210 710 111 HOH HOH . G 7 HOH A 211 711 212 HOH HOH . G 7 HOH A 212 712 182 HOH HOH . G 7 HOH A 213 713 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N E9M . . . F 6 62.729 -4.391 16.46 1 21.06 ? N E9M 405 A 1 HETATM 2 C CA E9M . . . F 6 63.393 -4.769 17.703 1 22.9 ? CA E9M 405 A 1 HETATM 3 C CG E9M . . . F 6 63.011 -2.383 18.594 1 18.76 ? CG E9M 405 A 1 HETATM 4 C CD1 E9M . . . F 6 62.799 -1.374 17.685 1 24.26 ? CD1 E9M 405 A 1 HETATM 5 C CD2 E9M . . . F 6 62.224 -2.109 19.688 1 23.2 ? CD2 E9M 405 A 1 HETATM 6 C CE2 E9M . . . F 6 61.52 -0.953 19.43 1 31.64 ? CE2 E9M 405 A 1 HETATM 7 C C E9M . . . F 6 62.374 -5.416 18.65 1 36.58 ? C E9M 405 A 1 HETATM 8 O O E9M . . . F 6 61.157 -5.488 18.313 1 27.42 ? O E9M 405 A 1 HETATM 9 C CB E9M . . . F 6 63.994 -3.549 18.399 1 21.2 ? CB E9M 405 A 1 HETATM 10 C CE3 E9M . . . F 6 62.023 -2.767 20.916 1 23.71 ? CE3 E9M 405 A 1 HETATM 11 N NE1 E9M . . . F 6 61.888 -0.505 18.19 1 29.36 ? NE1 E9M 405 A 1 HETATM 12 C CZ3 E9M . . . F 6 61.131 -2.236 21.856 1 23.93 ? CZ3 E9M 405 A 1 HETATM 13 C CZ2 E9M . . . F 6 60.61 -0.418 20.372 1 28.36 ? CZ2 E9M 405 A 1 HETATM 14 C CH2 E9M . . . F 6 60.42 -1.061 21.588 1 27.87 ? CH2 E9M 405 A 1 HETATM 15 C CN2 E9M . . . F 6 62.445 -5.571 15.649 1 23.76 ? CN2 E9M 405 A 1 HETATM 16 O OXT E9M . . . F 6 62.743 -5.877 19.765 1 31.61 ? OXT E9M 405 A 1 HETATM 17 H H E9M . . . F 6 61.867 -3.931 16.678 1 25.42 ? H E9M 405 A 1 HETATM 18 H HA E9M . . . F 6 64.186 -5.465 17.461 1 27.62 ? HA E9M 405 A 1 HETATM 19 H HD1 E9M . . . F 6 63.282 -1.287 16.72 1 29.26 ? HD1 E9M 405 A 1 HETATM 20 H HB3 E9M . . . F 6 64.353 -3.857 19.375 1 25.59 ? HB3 E9M 405 A 1 HETATM 21 H HB2 E9M . . . F 6 64.828 -3.193 17.802 1 25.59 ? HB2 E9M 405 A 1 HETATM 22 H HE3 E9M . . . F 6 62.558 -3.683 21.134 1 28.61 ? HE3 E9M 405 A 1 HETATM 23 H HE1 E9M . . . F 6 61.545 0.318 17.735 1 35.38 ? HE1 E9M 405 A 1 HETATM 24 H HZ3 E9M . . . F 6 60.989 -2.742 22.803 1 28.87 ? HZ3 E9M 405 A 1 HETATM 25 H HZ2 E9M . . . F 6 60.063 0.488 20.145 1 34.18 ? HZ2 E9M 405 A 1 HETATM 26 H HH2 E9M . . . F 6 59.73 -0.659 22.32 1 33.59 ? HH2 E9M 405 A 1 HETATM 27 H HN3 E9M . . . F 6 63.205 -6.325 15.829 1 28.66 ? HN3 E9M 405 A 1 HETATM 28 H HN1 E9M . . . F 6 61.47 -5.968 15.916 1 28.66 ? HN1 E9M 405 A 1 HETATM 29 H HN2 E9M . . . F 6 62.449 -5.297 14.598 1 28.66 ? HN2 E9M 405 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #