data_7W9K # _model_server_result.job_id u3tdQpYpdkha8lDBGw2BEw _model_server_result.datetime_utc '2025-03-04 13:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":2013}' # _entry.id 7W9K # _exptl.entry_id 7W9K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 421.508 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W9K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2007 NAG 4 n D NAG 2 D 2 NAG A 2008 NAG 4 n E NAG 1 E 1 NAG A 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG 4 n F NAG 1 F 1 NAG B 304 NAG 4 n F NAG 2 F 2 NAG B 305 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 938 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? disulf ? disulf4 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 NA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 OA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 PA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A OD1 ASP 404 A ASP 361 1_555 P NA NA . A NA 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc2 A OE2 GLU 973 A GLU 930 1_555 P NA NA . A NA 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc3 P NA NA . A NA 2010 1_555 RA O HOH . A HOH 2107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? # _chem_comp.formula 'C20 H40 N O6 P' _chem_comp.formula_weight 421.508 _chem_comp.id 1PW _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG PBB 1PW doub 1 n n PBB OAF 1PW sing 2 n n PBB OAD 1PW sing 3 n n PBB OAX 1PW sing 4 n n CAV OAX 1PW sing 5 n n CAV CBA 1PW sing 6 n n OAE CAZ 1PW sing 7 n n CBA CAZ 1PW sing 8 n n CBA NAW 1PW sing 9 n n CAZ CAI 1PW sing 10 n n OAC CAY 1PW doub 11 n n NAW CAY 1PW sing 12 n n CAY CAB 1PW sing 13 n n CAI CAH 1PW doub 14 e n CAH CAK 1PW sing 15 n n CAK CAM 1PW sing 16 n n CAM CAO 1PW sing 17 n n CAO CAQ 1PW sing 18 n n CAQ CAS 1PW sing 19 n n CAS CAU 1PW sing 20 n n CAU CAT 1PW sing 21 n n CAT CAR 1PW sing 22 n n CAR CAP 1PW sing 23 n n CAP CAN 1PW sing 24 n n CAN CAL 1PW sing 25 n n CAL CAJ 1PW sing 26 n n CAJ CAA 1PW sing 27 n n CAA H1 1PW sing 28 n n CAA H2 1PW sing 29 n n CAA H3 1PW sing 30 n n CAJ H4 1PW sing 31 n n CAJ H5 1PW sing 32 n n CAL H6 1PW sing 33 n n CAL H7 1PW sing 34 n n CAN H8 1PW sing 35 n n CAN H9 1PW sing 36 n n CAP H10 1PW sing 37 n n CAP H11 1PW sing 38 n n CAR H12 1PW sing 39 n n CAR H13 1PW sing 40 n n CAT H14 1PW sing 41 n n CAT H15 1PW sing 42 n n CAU H16 1PW sing 43 n n CAU H17 1PW sing 44 n n CAS H18 1PW sing 45 n n CAS H19 1PW sing 46 n n CAQ H20 1PW sing 47 n n CAQ H21 1PW sing 48 n n CAO H22 1PW sing 49 n n CAO H23 1PW sing 50 n n CAM H24 1PW sing 51 n n CAM H25 1PW sing 52 n n CAK H26 1PW sing 53 n n CAK H27 1PW sing 54 n n CAH H28 1PW sing 55 n n CAI H29 1PW sing 56 n n CAZ H30 1PW sing 57 n n OAE H31 1PW sing 58 n n CBA H32 1PW sing 59 n n NAW H33 1PW sing 60 n n CAB H34 1PW sing 61 n n CAB H35 1PW sing 62 n n CAB H36 1PW sing 63 n n CAV H37 1PW sing 64 n n CAV H38 1PW sing 65 n n OAF H39 1PW sing 66 n n OAD H40 1PW sing 67 n n # _atom_sites.entry_id 7W9K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2006 NAG NAG . H 6 P5S A 1 2002 2012 P5S P5S . I 7 Y01 A 1 2003 2015 Y01 Y01 . J 7 Y01 A 1 2004 2016 Y01 Y01 . K 7 Y01 A 1 2005 2017 Y01 Y01 . L 8 9Z9 A 1 2006 2019 9Z9 9Z9 . M 7 Y01 A 1 2007 2020 Y01 Y01 . N 5 NAG A 1 2008 2021 NAG NAG . O 7 Y01 A 1 2009 2022 Y01 Y01 . P 9 NA A 1 2010 3 NA NA . Q 10 LPE A 1 2011 2009 LPE LPE . R 10 LPE A 1 2012 2010 LPE LPE . S 11 1PW A 1 2013 2011 1PW 1PW . T 10 LPE A 1 2014 2012 LPE LPE . U 12 PCW A 1 2015 2013 PCW PCW . V 10 LPE A 1 2016 2014 LPE LPE . W 10 LPE A 1 2017 2015 LPE LPE . X 12 PCW A 1 2018 2016 PCW PCW . Y 6 P5S A 1 2019 2017 P5S LPE . Z 12 PCW A 1 2020 2018 PCW PCW . AA 10 LPE A 1 2021 2019 LPE LPE . BA 10 LPE A 1 2022 2020 LPE LPE . CA 10 LPE A 1 2023 2021 LPE LPE . DA 10 LPE A 1 2024 2022 LPE LPE . EA 10 LPE A 1 2025 2023 LPE LPE . FA 10 LPE A 1 2026 2024 LPE LPE . GA 10 LPE A 1 2027 2031 LPE LPE . HA 10 LPE A 1 2028 2032 LPE LPE . IA 12 PCW A 1 2029 2035 PCW PCW . JA 12 PCW A 1 2030 2036 PCW PCW . KA 6 P5S A 1 2031 2039 P5S P5S . LA 7 Y01 A 1 2032 2040 Y01 Y01 . MA 10 LPE A 1 2033 305 LPE LPE . NA 5 NAG B 1 301 301 NAG NAG . OA 5 NAG B 1 302 302 NAG NAG . PA 5 NAG B 1 303 303 NAG NAG . QA 10 LPE B 1 304 306 LPE LPE . RA 13 HOH A 1 2101 10 HOH HOH . RA 13 HOH A 2 2102 2 HOH HOH . RA 13 HOH A 3 2103 9 HOH HOH . RA 13 HOH A 4 2104 7 HOH HOH . RA 13 HOH A 5 2105 11 HOH HOH . RA 13 HOH A 6 2106 6 HOH HOH . RA 13 HOH A 7 2107 1 HOH HOH . RA 13 HOH A 8 2108 8 HOH HOH . RA 13 HOH A 9 2109 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 1PW . . . S 11 216.464 190.426 204.581 1 28.66 ? CAA 1PW 2013 A 1 HETATM 2 C CAJ 1PW . . . S 11 217.259 191.203 205.607 1 28.66 ? CAJ 1PW 2013 A 1 HETATM 3 C CAL 1PW . . . S 11 217.522 192.651 205.26 1 28.66 ? CAL 1PW 2013 A 1 HETATM 4 C CAN 1PW . . . S 11 216.298 193.511 204.988 1 28.66 ? CAN 1PW 2013 A 1 HETATM 5 C CAP 1PW . . . S 11 216.557 194.755 204.157 1 28.66 ? CAP 1PW 2013 A 1 HETATM 6 C CAR 1PW . . . S 11 217.555 195.738 204.742 1 28.66 ? CAR 1PW 2013 A 1 HETATM 7 C CAT 1PW . . . S 11 217.31 197.172 204.304 1 28.66 ? CAT 1PW 2013 A 1 HETATM 8 C CAU 1PW . . . S 11 218.126 198.225 205.016 1 28.66 ? CAU 1PW 2013 A 1 HETATM 9 C CAS 1PW . . . S 11 217.647 199.637 204.742 1 28.66 ? CAS 1PW 2013 A 1 HETATM 10 C CAQ 1PW . . . S 11 218.638 200.726 205.113 1 28.66 ? CAQ 1PW 2013 A 1 HETATM 11 C CAO 1PW . . . S 11 218.792 200.97 206.605 1 28.66 ? CAO 1PW 2013 A 1 HETATM 12 C CAM 1PW . . . S 11 217.613 201.665 207.257 1 28.66 ? CAM 1PW 2013 A 1 HETATM 13 C CAK 1PW . . . S 11 217.994 202.619 208.38 1 28.66 ? CAK 1PW 2013 A 1 HETATM 14 C CAH 1PW . . . S 11 216.832 202.998 209.219 1 28.66 ? CAH 1PW 2013 A 1 HETATM 15 C CAI 1PW . . . S 11 216.352 204.216 209.369 1 28.66 ? CAI 1PW 2013 A 1 HETATM 16 C CAZ 1PW . . . S 11 214.977 204.519 209.867 1 28.66 ? CAZ 1PW 2013 A 1 HETATM 17 O OAE 1PW . . . S 11 214.802 203.928 211.137 1 28.66 ? OAE 1PW 2013 A 1 HETATM 18 C CBA 1PW . . . S 11 214.641 206.021 209.96 1 28.66 ? CBA 1PW 2013 A 1 HETATM 19 C CAV 1PW . . . S 11 213.285 206.222 210.618 1 28.66 ? CAV 1PW 2013 A 1 HETATM 20 O OAX 1PW . . . S 11 212.21 205.658 209.849 1 28.66 ? OAX 1PW 2013 A 1 HETATM 21 P PBB 1PW . . . S 11 210.794 205.38 210.584 1 28.66 ? PBB 1PW 2013 A 1 HETATM 22 O OAF 1PW . . . S 11 210.456 206.706 211.236 1 28.66 ? OAF 1PW 2013 A 1 HETATM 23 O OAG 1PW . . . S 11 211.084 204.263 211.567 1 28.66 ? OAG 1PW 2013 A 1 HETATM 24 O OAD 1PW . . . S 11 209.786 204.989 209.522 1 28.66 ? OAD 1PW 2013 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #