data_7W9M # _model_server_result.job_id FdGNKBZYutJziF9SCULqgQ _model_server_result.datetime_utc '2024-11-22 02:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2006}' # _entry.id 7W9M # _exptl.entry_id 7W9M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W9M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 O N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 304 NAG 4 n D NAG 2 E 2 NAG E 305 NAG 4 n E NAG 1 D 1 NAG D 2007 NAG 4 n E NAG 2 D 2 NAG D 2008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf10 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 H C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 P C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 Q C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 R C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale9 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 671 n n CBA CAB Y01 sing 672 n n CBA CAN Y01 sing 673 n n CAN CAJ Y01 sing 674 n n CAJ CAO Y01 sing 675 n n CAO CBB Y01 sing 676 n n CBB CAC Y01 sing 677 n n CBB CBE Y01 sing 678 n n CBE CAP Y01 sing 679 n n CBE CBI Y01 sing 680 n n CAP CAQ Y01 sing 681 n n CAQ CBG Y01 sing 682 n n CBG CBI Y01 sing 683 n n CBG CBD Y01 sing 684 n n CBI CAE Y01 sing 685 n n CBI CAU Y01 sing 686 n n CAU CAS Y01 sing 687 n n CAS CBF Y01 sing 688 n n CBF CBD Y01 sing 689 n n CBF CBH Y01 sing 690 n n CBD CAK Y01 sing 691 n n CAK CAI Y01 sing 692 n n CAI CAZ Y01 doub 693 n n CAZ CAV Y01 sing 694 n n CAZ CBH Y01 sing 695 n n CAV CBC Y01 sing 696 n n CBH CAD Y01 sing 697 n n CBH CAT Y01 sing 698 n n CAT CAR Y01 sing 699 n n CAR CBC Y01 sing 700 n n CBC OAW Y01 sing 701 n n OAW CAY Y01 sing 702 n n CAY OAG Y01 doub 703 n n CAY CAM Y01 sing 704 n n CAM CAL Y01 sing 705 n n CAL CAX Y01 sing 706 n n CAX OAH Y01 sing 707 n n CAX OAF Y01 doub 708 n n CAA HAA1 Y01 sing 709 n n CAA HAA2 Y01 sing 710 n n CAA HAA3 Y01 sing 711 n n CBA HBA Y01 sing 712 n n CAB HAB1 Y01 sing 713 n n CAB HAB2 Y01 sing 714 n n CAB HAB3 Y01 sing 715 n n CAN HAN1 Y01 sing 716 n n CAN HAN2 Y01 sing 717 n n CAJ HAJ1 Y01 sing 718 n n CAJ HAJ2 Y01 sing 719 n n CAO HAO1 Y01 sing 720 n n CAO HAO2 Y01 sing 721 n n CBB HBB Y01 sing 722 n n CAC HAC1 Y01 sing 723 n n CAC HAC2 Y01 sing 724 n n CAC HAC3 Y01 sing 725 n n CBE HBE Y01 sing 726 n n CAP HAP1 Y01 sing 727 n n CAP HAP2 Y01 sing 728 n n CAQ HAQ1 Y01 sing 729 n n CAQ HAQ2 Y01 sing 730 n n CBG HBG Y01 sing 731 n n CBD HBD Y01 sing 732 n n CAE HAE1 Y01 sing 733 n n CAE HAE2 Y01 sing 734 n n CAE HAE3 Y01 sing 735 n n CAU HAU1 Y01 sing 736 n n CAU HAU2 Y01 sing 737 n n CAS HAS1 Y01 sing 738 n n CAS HAS2 Y01 sing 739 n n CBF HBF Y01 sing 740 n n CAK HAK1 Y01 sing 741 n n CAK HAK2 Y01 sing 742 n n CAI HAI Y01 sing 743 n n CAV HAV1 Y01 sing 744 n n CAV HAV2 Y01 sing 745 n n CBC HBC Y01 sing 746 n n CAD HAD1 Y01 sing 747 n n CAD HAD2 Y01 sing 748 n n CAD HAD3 Y01 sing 749 n n CAT HAT1 Y01 sing 750 n n CAT HAT2 Y01 sing 751 n n CAR HAR1 Y01 sing 752 n n CAR HAR2 Y01 sing 753 n n CAM HAM1 Y01 sing 754 n n CAM HAM2 Y01 sing 755 n n CAL HAL1 Y01 sing 756 n n CAL HAL2 Y01 sing 757 n n OAH HAH Y01 sing 758 n n # _atom_sites.entry_id 7W9M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 9SR A 1 2001 1901 9SR TTX . G 6 NAG A 1 2002 2006 NAG NAG . H 6 NAG A 1 2003 2009 NAG NAG . I 7 P5S A 1 2004 2012 P5S P5S . J 8 Y01 A 1 2005 2015 Y01 Y01 . K 8 Y01 A 1 2006 2016 Y01 Y01 . L 8 Y01 A 1 2007 2017 Y01 Y01 . M 8 Y01 A 1 2008 2020 Y01 Y01 . N 6 NAG A 1 2009 2021 NAG NAG . O 8 Y01 A 1 2010 2022 Y01 Y01 . P 6 NAG B 1 301 301 NAG NAG . Q 6 NAG B 1 302 302 NAG NAG . R 6 NAG B 1 303 303 NAG NAG . S 9 LPE B 1 304 306 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . K 8 130.773 83.262 123.242 1 20 ? CAA Y01 2006 A 1 HETATM 2 C CBA Y01 . . . K 8 129.269 83.524 123.126 1 20 ? CBA Y01 2006 A 1 HETATM 3 C CAB Y01 . . . K 8 128.59 83.178 124.454 1 20 ? CAB Y01 2006 A 1 HETATM 4 C CAN Y01 . . . K 8 129.034 85.001 122.803 1 20 ? CAN Y01 2006 A 1 HETATM 5 C CAJ Y01 . . . K 8 129.604 85.317 121.419 1 20 ? CAJ Y01 2006 A 1 HETATM 6 C CAO Y01 . . . K 8 129.367 86.794 121.096 1 20 ? CAO Y01 2006 A 1 HETATM 7 C CBB Y01 . . . K 8 129.938 87.109 119.711 1 20 ? CBB Y01 2006 A 1 HETATM 8 C CAC Y01 . . . K 8 129.161 86.332 118.649 1 20 ? CAC Y01 2006 A 1 HETATM 9 C CBE Y01 . . . K 8 129.813 88.61 119.439 1 20 ? CBE Y01 2006 A 1 HETATM 10 C CAP Y01 . . . K 8 130.626 89.416 120.484 1 20 ? CAP Y01 2006 A 1 HETATM 11 C CAQ Y01 . . . K 8 131.643 90.273 119.682 1 20 ? CAQ Y01 2006 A 1 HETATM 12 C CBG Y01 . . . K 8 130.979 90.395 118.307 1 20 ? CBG Y01 2006 A 1 HETATM 13 C CBI Y01 . . . K 8 130.437 88.956 118.09 1 20 ? CBI Y01 2006 A 1 HETATM 14 C CAE Y01 . . . K 8 131.599 88.003 117.796 1 20 ? CAE Y01 2006 A 1 HETATM 15 C CAU Y01 . . . K 8 129.494 89.009 116.903 1 20 ? CAU Y01 2006 A 1 HETATM 16 C CAS Y01 . . . K 8 130.338 89.373 115.672 1 20 ? CAS Y01 2006 A 1 HETATM 17 C CBF Y01 . . . K 8 131.076 90.696 115.863 1 20 ? CBF Y01 2006 A 1 HETATM 18 C CBD Y01 . . . K 8 131.913 90.704 117.149 1 20 ? CBD Y01 2006 A 1 HETATM 19 C CAK Y01 . . . K 8 132.502 92.107 117.328 1 20 ? CAK Y01 2006 A 1 HETATM 20 C CAI Y01 . . . K 8 133.283 92.476 116.1 1 20 ? CAI Y01 2006 A 1 HETATM 21 C CAZ Y01 . . . K 8 133.034 91.979 114.926 1 20 ? CAZ Y01 2006 A 1 HETATM 22 C CAV Y01 . . . K 8 133.888 92.436 113.754 1 20 ? CAV Y01 2006 A 1 HETATM 23 C CBH Y01 . . . K 8 131.953 90.974 114.655 1 20 ? CBH Y01 2006 A 1 HETATM 24 C CAD Y01 . . . K 8 132.618 89.661 114.235 1 20 ? CAD Y01 2006 A 1 HETATM 25 C CAT Y01 . . . K 8 131.093 91.454 113.482 1 20 ? CAT Y01 2006 A 1 HETATM 26 C CAR Y01 . . . K 8 131.993 91.747 112.279 1 20 ? CAR Y01 2006 A 1 HETATM 27 C CBC Y01 . . . K 8 132.958 92.883 112.623 1 20 ? CBC Y01 2006 A 1 HETATM 28 O OAW Y01 . . . K 8 133.747 93.219 111.452 1 20 ? OAW Y01 2006 A 1 HETATM 29 C CAY Y01 . . . K 8 134.161 94.49 111.339 1 20 ? CAY Y01 2006 A 1 HETATM 30 O OAG Y01 . . . K 8 133.872 95.298 112.191 1 20 ? OAG Y01 2006 A 1 HETATM 31 C CAM Y01 . . . K 8 134.985 94.913 110.15 1 20 ? CAM Y01 2006 A 1 HETATM 32 C CAL Y01 . . . K 8 135.322 96.401 110.265 1 20 ? CAL Y01 2006 A 1 HETATM 33 C CAX Y01 . . . K 8 136.144 96.824 109.075 1 20 ? CAX Y01 2006 A 1 HETATM 34 O OAH Y01 . . . K 8 136.559 98.095 108.963 1 20 ? OAH Y01 2006 A 1 HETATM 35 O OAF Y01 . . . K 8 136.433 96.015 108.223 1 20 ? OAF Y01 2006 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #