data_7W9M # _model_server_result.job_id sc2PV1O2V0vjy1QdHw32hg _model_server_result.datetime_utc '2024-11-22 01:48:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":304}' # _entry.id 7W9M # _exptl.entry_id 7W9M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W9M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 E 1 NAG E 304 NAG 4 n D NAG 2 E 2 NAG E 305 NAG 4 n E NAG 1 D 1 NAG D 2007 NAG 4 n E NAG 2 D 2 NAG D 2008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf10 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 H C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 P C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 Q C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 R C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 D C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale9 D O4 NAG . E NAG 1 1_555 D C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LPE sing 234 n n C1 C2 LPE sing 235 n n C1 H11 LPE sing 236 n n C1 H12 LPE sing 237 n n O1 C11 LPE sing 238 n n C2 O2H LPE sing 239 n n C2 C3 LPE sing 240 n n C2 H21 LPE sing 241 n n O2H HO21 LPE sing 242 n n C3 O3 LPE sing 243 n n C3 H31 LPE sing 244 n n C3 H32 LPE sing 245 n n C11 C12 LPE sing 246 n n C11 H111 LPE sing 247 n n C11 H112 LPE sing 248 n n C12 C13 LPE sing 249 n n C12 H121 LPE sing 250 n n C12 H122 LPE sing 251 n n O3 P LPE sing 252 n n P O31 LPE doub 253 n n P O32 LPE sing 254 n n P O33 LPE sing 255 n n O32 HO31 LPE sing 256 n n O33 C31 LPE sing 257 n n C31 C32 LPE sing 258 n n C31 H311 LPE sing 259 n n C31 H312 LPE sing 260 n n C32 N LPE sing 261 n n C32 H321 LPE sing 262 n n C32 H322 LPE sing 263 n n N C1N LPE sing 264 n n N C2N LPE sing 265 n n N C3N LPE sing 266 n n C1N H1N1 LPE sing 267 n n C1N H1N2 LPE sing 268 n n C1N H1N3 LPE sing 269 n n C2N H2N1 LPE sing 270 n n C2N H2N2 LPE sing 271 n n C2N H2N3 LPE sing 272 n n C3N H3N1 LPE sing 273 n n C3N H3N2 LPE sing 274 n n C3N H3N3 LPE sing 275 n n C13 C14 LPE sing 276 n n C13 H131 LPE sing 277 n n C13 H132 LPE sing 278 n n C14 C15 LPE sing 279 n n C14 H141 LPE sing 280 n n C14 H142 LPE sing 281 n n C15 C16 LPE sing 282 n n C15 H151 LPE sing 283 n n C15 H152 LPE sing 284 n n C16 C17 LPE sing 285 n n C16 H161 LPE sing 286 n n C16 H162 LPE sing 287 n n C17 C18 LPE sing 288 n n C17 H171 LPE sing 289 n n C17 H172 LPE sing 290 n n C18 C19 LPE sing 291 n n C18 H181 LPE sing 292 n n C18 H182 LPE sing 293 n n C19 C20 LPE sing 294 n n C19 H191 LPE sing 295 n n C19 H192 LPE sing 296 n n C20 C21 LPE sing 297 n n C20 H201 LPE sing 298 n n C20 H202 LPE sing 299 n n C21 C22 LPE sing 300 n n C21 H211 LPE sing 301 n n C21 H212 LPE sing 302 n n C22 C23 LPE sing 303 n n C22 H221 LPE sing 304 n n C22 H222 LPE sing 305 n n C23 C24 LPE sing 306 n n C23 H231 LPE sing 307 n n C23 H232 LPE sing 308 n n C24 C25 LPE sing 309 n n C24 H241 LPE sing 310 n n C24 H242 LPE sing 311 n n C25 C26 LPE sing 312 n n C25 H251 LPE sing 313 n n C25 H252 LPE sing 314 n n C26 C27 LPE sing 315 n n C26 H261 LPE sing 316 n n C26 H262 LPE sing 317 n n C27 C28 LPE sing 318 n n C27 H271 LPE sing 319 n n C27 H272 LPE sing 320 n n C28 H281 LPE sing 321 n n C28 H282 LPE sing 322 n n C28 H283 LPE sing 323 n n # _atom_sites.entry_id 7W9M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 9SR A 1 2001 1901 9SR TTX . G 6 NAG A 1 2002 2006 NAG NAG . H 6 NAG A 1 2003 2009 NAG NAG . I 7 P5S A 1 2004 2012 P5S P5S . J 8 Y01 A 1 2005 2015 Y01 Y01 . K 8 Y01 A 1 2006 2016 Y01 Y01 . L 8 Y01 A 1 2007 2017 Y01 Y01 . M 8 Y01 A 1 2008 2020 Y01 Y01 . N 6 NAG A 1 2009 2021 NAG NAG . O 8 Y01 A 1 2010 2022 Y01 Y01 . P 6 NAG B 1 301 301 NAG NAG . Q 6 NAG B 1 302 302 NAG NAG . R 6 NAG B 1 303 303 NAG NAG . S 9 LPE B 1 304 306 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . S 9 108.727 77.815 123.181 1 37.62 ? C1 LPE 304 B 1 HETATM 2 O O1 LPE . . . S 9 108.606 78.023 124.59 1 37.62 ? O1 LPE 304 B 1 HETATM 3 C C2 LPE . . . S 9 107.359 77.492 122.593 1 37.62 ? C2 LPE 304 B 1 HETATM 4 O O2H LPE . . . S 9 106.463 78.591 122.779 1 37.62 ? O2H LPE 304 B 1 HETATM 5 C C3 LPE . . . S 9 107.489 77.241 121.101 1 37.62 ? C3 LPE 304 B 1 HETATM 6 C C11 LPE . . . S 9 109.282 77.023 125.35 1 37.62 ? C11 LPE 304 B 1 HETATM 7 O O3 LPE . . . S 9 106.213 76.849 120.609 1 37.62 ? O3 LPE 304 B 1 HETATM 8 P P LPE . . . S 9 105.803 75.297 120.625 1 37.62 ? P LPE 304 B 1 HETATM 9 O O31 LPE . . . S 9 107.06 74.477 120.784 1 37.62 1 O31 LPE 304 B 1 HETATM 10 O O32 LPE . . . S 9 104.649 75.126 121.577 1 37.62 ? O32 LPE 304 B 1 HETATM 11 O O33 LPE . . . S 9 105.24 75.046 119.139 1 37.62 ? O33 LPE 304 B 1 HETATM 12 C C31 LPE . . . S 9 104.286 74.022 118.877 1 37.62 ? C31 LPE 304 B 1 HETATM 13 C C32 LPE . . . S 9 104.985 72.668 118.929 1 37.62 ? C32 LPE 304 B 1 HETATM 14 N N LPE . . . S 9 104.157 71.633 118.297 1 37.62 ? N LPE 304 B 1 HETATM 15 C C1N LPE . . . S 9 102.763 71.734 118.747 1 37.62 ? C1N LPE 304 B 1 HETATM 16 C C2N LPE . . . S 9 104.199 71.817 116.842 1 37.62 ? C2N LPE 304 B 1 HETATM 17 C C3N LPE . . . S 9 104.685 70.307 118.637 1 37.62 ? C3N LPE 304 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #