data_7W9P # _model_server_result.job_id yiNLB2KOvK6Kqtvo1ywV2g _model_server_result.datetime_utc '2024-11-22 07:49:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2005}' # _entry.id 7W9P # _exptl.entry_id 7W9P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W9P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 O N N ? 8 JA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 2007 NAG 4 n D NAG 2 D 2 NAG D 2008 NAG 4 n E NAG 1 E 1 NAG D 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG 4 n F NAG 1 F 1 NAG E 304 NAG 4 n F NAG 2 F 2 NAG E 305 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 938 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf4 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 KA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 LA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 MA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 874 n n CBA CAB Y01 sing 875 n n CBA CAN Y01 sing 876 n n CAN CAJ Y01 sing 877 n n CAJ CAO Y01 sing 878 n n CAO CBB Y01 sing 879 n n CBB CAC Y01 sing 880 n n CBB CBE Y01 sing 881 n n CBE CAP Y01 sing 882 n n CBE CBI Y01 sing 883 n n CAP CAQ Y01 sing 884 n n CAQ CBG Y01 sing 885 n n CBG CBI Y01 sing 886 n n CBG CBD Y01 sing 887 n n CBI CAE Y01 sing 888 n n CBI CAU Y01 sing 889 n n CAU CAS Y01 sing 890 n n CAS CBF Y01 sing 891 n n CBF CBD Y01 sing 892 n n CBF CBH Y01 sing 893 n n CBD CAK Y01 sing 894 n n CAK CAI Y01 sing 895 n n CAI CAZ Y01 doub 896 n n CAZ CAV Y01 sing 897 n n CAZ CBH Y01 sing 898 n n CAV CBC Y01 sing 899 n n CBH CAD Y01 sing 900 n n CBH CAT Y01 sing 901 n n CAT CAR Y01 sing 902 n n CAR CBC Y01 sing 903 n n CBC OAW Y01 sing 904 n n OAW CAY Y01 sing 905 n n CAY OAG Y01 doub 906 n n CAY CAM Y01 sing 907 n n CAM CAL Y01 sing 908 n n CAL CAX Y01 sing 909 n n CAX OAH Y01 sing 910 n n CAX OAF Y01 doub 911 n n CAA HAA1 Y01 sing 912 n n CAA HAA2 Y01 sing 913 n n CAA HAA3 Y01 sing 914 n n CBA HBA Y01 sing 915 n n CAB HAB1 Y01 sing 916 n n CAB HAB2 Y01 sing 917 n n CAB HAB3 Y01 sing 918 n n CAN HAN1 Y01 sing 919 n n CAN HAN2 Y01 sing 920 n n CAJ HAJ1 Y01 sing 921 n n CAJ HAJ2 Y01 sing 922 n n CAO HAO1 Y01 sing 923 n n CAO HAO2 Y01 sing 924 n n CBB HBB Y01 sing 925 n n CAC HAC1 Y01 sing 926 n n CAC HAC2 Y01 sing 927 n n CAC HAC3 Y01 sing 928 n n CBE HBE Y01 sing 929 n n CAP HAP1 Y01 sing 930 n n CAP HAP2 Y01 sing 931 n n CAQ HAQ1 Y01 sing 932 n n CAQ HAQ2 Y01 sing 933 n n CBG HBG Y01 sing 934 n n CBD HBD Y01 sing 935 n n CAE HAE1 Y01 sing 936 n n CAE HAE2 Y01 sing 937 n n CAE HAE3 Y01 sing 938 n n CAU HAU1 Y01 sing 939 n n CAU HAU2 Y01 sing 940 n n CAS HAS1 Y01 sing 941 n n CAS HAS2 Y01 sing 942 n n CBF HBF Y01 sing 943 n n CAK HAK1 Y01 sing 944 n n CAK HAK2 Y01 sing 945 n n CAI HAI Y01 sing 946 n n CAV HAV1 Y01 sing 947 n n CAV HAV2 Y01 sing 948 n n CBC HBC Y01 sing 949 n n CAD HAD1 Y01 sing 950 n n CAD HAD2 Y01 sing 951 n n CAD HAD3 Y01 sing 952 n n CAT HAT1 Y01 sing 953 n n CAT HAT2 Y01 sing 954 n n CAR HAR1 Y01 sing 955 n n CAR HAR2 Y01 sing 956 n n CAM HAM1 Y01 sing 957 n n CAM HAM2 Y01 sing 958 n n CAL HAL1 Y01 sing 959 n n CAL HAL2 Y01 sing 960 n n OAH HAH Y01 sing 961 n n # _atom_sites.entry_id 7W9P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 9SL A 1 2001 1901 9SL STX . H 6 NAG A 1 2002 2006 NAG NAG . I 7 P5S A 1 2003 2012 P5S P5S . J 8 Y01 A 1 2004 2015 Y01 Y01 . K 8 Y01 A 1 2005 2016 Y01 Y01 . L 8 Y01 A 1 2006 2017 Y01 Y01 . M 8 Y01 A 1 2007 2020 Y01 Y01 . N 6 NAG A 1 2008 2021 NAG NAG . O 8 Y01 A 1 2009 2022 Y01 Y01 . P 9 LPE A 1 2010 2010 LPE LPE . Q 10 1PW A 1 2011 2011 1PW 1PW . R 9 LPE A 1 2012 2012 LPE LPE . S 11 PCW A 1 2013 2013 PCW PCW . T 9 LPE A 1 2014 2014 LPE LPE . U 9 LPE A 1 2015 2015 LPE LPE . V 11 PCW A 1 2016 2016 PCW PCW . W 7 P5S A 1 2017 2017 P5S LPE . X 11 PCW A 1 2018 2018 PCW PCW . Y 9 LPE A 1 2019 2019 LPE LPE . Z 9 LPE A 1 2020 2020 LPE LPE . AA 9 LPE A 1 2021 2021 LPE LPE . BA 9 LPE A 1 2022 2022 LPE LPE . CA 9 LPE A 1 2023 2023 LPE LPE . DA 9 LPE A 1 2024 2024 LPE LPE . EA 9 LPE A 1 2025 2031 LPE LPE . FA 9 LPE A 1 2026 2032 LPE LPE . GA 11 PCW A 1 2027 2035 PCW PCW . HA 11 PCW A 1 2028 2036 PCW PCW . IA 7 P5S A 1 2029 2039 P5S P5S . JA 8 Y01 A 1 2030 2040 Y01 Y01 . KA 6 NAG B 1 301 301 NAG NAG . LA 6 NAG B 1 302 302 NAG NAG . MA 6 NAG B 1 303 303 NAG NAG . NA 9 LPE B 1 304 306 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . K 8 130.715 81.574 121.79 1 20 ? CAA Y01 2005 A 1 HETATM 2 C CBA Y01 . . . K 8 129.187 81.65 121.861 1 20 ? CBA Y01 2005 A 1 HETATM 3 C CAB Y01 . . . K 8 128.718 81.165 123.234 1 20 ? CAB Y01 2005 A 1 HETATM 4 C CAN Y01 . . . K 8 128.741 83.098 121.652 1 20 ? CAN Y01 2005 A 1 HETATM 5 C CAJ Y01 . . . K 8 129.101 83.543 120.234 1 20 ? CAJ Y01 2005 A 1 HETATM 6 C CAO Y01 . . . K 8 128.653 84.992 120.024 1 20 ? CAO Y01 2005 A 1 HETATM 7 C CBB Y01 . . . K 8 129.013 85.436 118.604 1 20 ? CBB Y01 2005 A 1 HETATM 8 C CAC Y01 . . . K 8 128.212 84.613 117.594 1 20 ? CAC Y01 2005 A 1 HETATM 9 C CBE Y01 . . . K 8 128.678 86.92 118.435 1 20 ? CBE Y01 2005 A 1 HETATM 10 C CAP Y01 . . . K 8 129.509 87.774 119.427 1 20 ? CAP Y01 2005 A 1 HETATM 11 C CAQ Y01 . . . K 8 130.313 88.786 118.565 1 20 ? CAQ Y01 2005 A 1 HETATM 12 C CBG Y01 . . . K 8 129.48 88.883 117.283 1 20 ? CBG Y01 2005 A 1 HETATM 13 C CBI Y01 . . . K 8 129.091 87.398 117.046 1 20 ? CBI Y01 2005 A 1 HETATM 14 C CAE Y01 . . . K 8 130.315 86.611 116.568 1 20 ? CAE Y01 2005 A 1 HETATM 15 C CAU Y01 . . . K 8 128.014 87.384 115.979 1 20 ? CAU Y01 2005 A 1 HETATM 16 C CAS Y01 . . . K 8 128.655 87.903 114.683 1 20 ? CAS Y01 2005 A 1 HETATM 17 C CBF Y01 . . . K 8 129.247 89.299 114.865 1 20 ? CBF Y01 2005 A 1 HETATM 18 C CBD Y01 . . . K 8 130.226 89.356 116.047 1 20 ? CBD Y01 2005 A 1 HETATM 19 C CAK Y01 . . . K 8 130.66 90.813 116.238 1 20 ? CAK Y01 2005 A 1 HETATM 20 C CAI Y01 . . . K 8 131.24 91.329 114.953 1 20 ? CAI Y01 2005 A 1 HETATM 21 C CAZ Y01 . . . K 8 130.913 90.857 113.788 1 20 ? CAZ Y01 2005 A 1 HETATM 22 C CAV Y01 . . . K 8 131.56 91.467 112.555 1 20 ? CAV Y01 2005 A 1 HETATM 23 C CBH Y01 . . . K 8 129.936 89.736 113.582 1 20 ? CBH Y01 2005 A 1 HETATM 24 C CAD Y01 . . . K 8 130.696 88.536 113.015 1 20 ? CAD Y01 2005 A 1 HETATM 25 C CAT Y01 . . . K 8 128.891 90.156 112.545 1 20 ? CAT Y01 2005 A 1 HETATM 26 C CAR Y01 . . . K 8 129.598 90.612 111.267 1 20 ? CAR Y01 2005 A 1 HETATM 27 C CBC Y01 . . . K 8 130.456 91.842 111.564 1 20 ? CBC Y01 2005 A 1 HETATM 28 O OAW Y01 . . . K 8 131.055 92.324 110.333 1 20 ? OAW Y01 2005 A 1 HETATM 29 C CAY Y01 . . . K 8 131.297 93.641 110.247 1 20 ? CAY Y01 2005 A 1 HETATM 30 O OAG Y01 . . . K 8 131.018 94.369 111.172 1 20 ? OAG Y01 2005 A 1 HETATM 31 C CAM Y01 . . . K 8 131.917 94.216 108.999 1 20 ? CAM Y01 2005 A 1 HETATM 32 C CAL Y01 . . . K 8 132.086 95.727 109.16 1 20 ? CAL Y01 2005 A 1 HETATM 33 C CAX Y01 . . . K 8 132.705 96.301 107.912 1 20 ? CAX Y01 2005 A 1 HETATM 34 O OAH Y01 . . . K 8 132.948 97.616 107.827 1 20 ? OAH Y01 2005 A 1 HETATM 35 O OAF Y01 . . . K 8 132.983 95.572 106.988 1 20 ? OAF Y01 2005 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #