data_7W9P # _model_server_result.job_id AgYh751JyJetDoOfm8vb_g _model_server_result.datetime_utc '2024-11-05 09:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":2021}' # _entry.id 7W9P # _exptl.entry_id 7W9P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W9P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 P N N ? 9 R N N ? 9 T N N ? 9 U N N ? 9 Y N N ? 9 Z N N ? 9 AA N N ? 9 BA N N ? 9 CA N N ? 9 DA N N ? 9 EA N N ? 9 FA N N ? 9 NA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 2007 NAG 4 n D NAG 2 D 2 NAG D 2008 NAG 4 n E NAG 1 E 1 NAG D 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG 4 n F NAG 1 F 1 NAG E 304 NAG 4 n F NAG 2 F 2 NAG E 305 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 938 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf4 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 KA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 LA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 MA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # _atom_sites.entry_id 7W9P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 9SL A 1 2001 1901 9SL STX . H 6 NAG A 1 2002 2006 NAG NAG . I 7 P5S A 1 2003 2012 P5S P5S . J 8 Y01 A 1 2004 2015 Y01 Y01 . K 8 Y01 A 1 2005 2016 Y01 Y01 . L 8 Y01 A 1 2006 2017 Y01 Y01 . M 8 Y01 A 1 2007 2020 Y01 Y01 . N 6 NAG A 1 2008 2021 NAG NAG . O 8 Y01 A 1 2009 2022 Y01 Y01 . P 9 LPE A 1 2010 2010 LPE LPE . Q 10 1PW A 1 2011 2011 1PW 1PW . R 9 LPE A 1 2012 2012 LPE LPE . S 11 PCW A 1 2013 2013 PCW PCW . T 9 LPE A 1 2014 2014 LPE LPE . U 9 LPE A 1 2015 2015 LPE LPE . V 11 PCW A 1 2016 2016 PCW PCW . W 7 P5S A 1 2017 2017 P5S LPE . X 11 PCW A 1 2018 2018 PCW PCW . Y 9 LPE A 1 2019 2019 LPE LPE . Z 9 LPE A 1 2020 2020 LPE LPE . AA 9 LPE A 1 2021 2021 LPE LPE . BA 9 LPE A 1 2022 2022 LPE LPE . CA 9 LPE A 1 2023 2023 LPE LPE . DA 9 LPE A 1 2024 2024 LPE LPE . EA 9 LPE A 1 2025 2031 LPE LPE . FA 9 LPE A 1 2026 2032 LPE LPE . GA 11 PCW A 1 2027 2035 PCW PCW . HA 11 PCW A 1 2028 2036 PCW PCW . IA 7 P5S A 1 2029 2039 P5S P5S . JA 8 Y01 A 1 2030 2040 Y01 Y01 . KA 6 NAG B 1 301 301 NAG NAG . LA 6 NAG B 1 302 302 NAG NAG . MA 6 NAG B 1 303 303 NAG NAG . NA 9 LPE B 1 304 306 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . AA 9 115.539 119.337 144.174 1 28.56 ? C1 LPE 2021 A 1 HETATM 2 O O1 LPE . . . AA 9 115.517 120.063 142.949 1 28.56 ? O1 LPE 2021 A 1 HETATM 3 C C2 LPE . . . AA 9 115.523 120.314 145.34 1 28.56 ? C2 LPE 2021 A 1 HETATM 4 O O2H LPE . . . AA 9 114.403 121.202 145.221 1 28.56 ? O2H LPE 2021 A 1 HETATM 5 C C3 LPE . . . AA 9 115.42 119.527 146.64 1 28.56 ? C3 LPE 2021 A 1 HETATM 6 C C11 LPE . . . AA 9 115.558 119.195 141.822 1 28.56 ? C11 LPE 2021 A 1 HETATM 7 C C12 LPE . . . AA 9 114.854 119.877 140.653 1 28.56 ? C12 LPE 2021 A 1 HETATM 8 O O3 LPE . . . AA 9 115.382 120.451 147.722 1 28.56 ? O3 LPE 2021 A 1 HETATM 9 P P LPE . . . AA 9 114.276 120.286 148.877 1 28.56 ? P LPE 2021 A 1 HETATM 10 O O31 LPE . . . AA 9 112.984 119.84 148.235 1 28.56 1 O31 LPE 2021 A 1 HETATM 11 O O32 LPE . . . AA 9 114.297 121.547 149.696 1 28.56 ? O32 LPE 2021 A 1 HETATM 12 O O33 LPE . . . AA 9 114.804 119.091 149.816 1 28.56 ? O33 LPE 2021 A 1 HETATM 13 C C31 LPE . . . AA 9 114.186 118.95 151.092 1 28.56 ? C31 LPE 2021 A 1 HETATM 14 C C32 LPE . . . AA 9 114.574 117.644 151.775 1 28.56 ? C32 LPE 2021 A 1 HETATM 15 N N LPE . . . AA 9 113.855 117.555 153.056 1 28.56 ? N LPE 2021 A 1 HETATM 16 C C1N LPE . . . AA 9 114.328 118.607 153.966 1 28.56 ? C1N LPE 2021 A 1 HETATM 17 C C2N LPE . . . AA 9 112.412 117.729 152.828 1 28.56 ? C2N LPE 2021 A 1 HETATM 18 C C3N LPE . . . AA 9 114.078 116.241 153.67 1 28.56 ? C3N LPE 2021 A 1 HETATM 19 C C13 LPE . . . AA 9 114.901 118.993 139.412 1 28.56 ? C13 LPE 2021 A 1 HETATM 20 C C14 LPE . . . AA 9 116.339 118.803 138.95 1 28.56 ? C14 LPE 2021 A 1 HETATM 21 C C15 LPE . . . AA 9 116.963 120.14 138.568 1 28.56 ? C15 LPE 2021 A 1 HETATM 22 C C16 LPE . . . AA 9 118.391 119.96 138.071 1 28.56 ? C16 LPE 2021 A 1 HETATM 23 C C17 LPE . . . AA 9 119 121.286 137.629 1 28.56 ? C17 LPE 2021 A 1 HETATM 24 C C18 LPE . . . AA 9 118.224 121.903 136.472 1 28.56 ? C18 LPE 2021 A 1 HETATM 25 C C19 LPE . . . AA 9 118.31 121.034 135.223 1 28.56 ? C19 LPE 2021 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #