data_7W9T # _model_server_result.job_id kBal_rTc7LARSaO4sWnwOQ _model_server_result.datetime_utc '2024-12-23 06:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2001}' # _entry.id 7W9T # _exptl.entry_id 7W9T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 299.286 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 2007 NAG 4 n D NAG 2 D 2 NAG D 2008 NAG 4 n E NAG 1 E 1 NAG D 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG 4 n F NAG 1 F 1 NAG E 304 NAG 4 n F NAG 2 F 2 NAG E 305 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 275 1_555 A SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 358 A CYS 315 1_555 A SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 938 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? disulf ? disulf4 A SG CYS 940 A CYS 897 1_555 A SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 978 A CYS 935 1_555 A SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 1393 A CYS 1350 1_555 A SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 1758 A CYS 1715 1_555 A SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 326 A ASN 283 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? covale ? covale2 A ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale3 A ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale4 A ND2 ASN 1418 A ASN 1375 1_555 N C1 NAG . A NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 JA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 KA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 LA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C10 H17 N7 O4' _chem_comp.formula_weight 299.286 _chem_comp.id 9SL _chem_comp.mon_nstd_flag . _chem_comp.name '[(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Saxitoxin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N13 C12 9SL sing 1 n n N13 C14 9SL sing 2 n n N15 C12 9SL sing 3 n n C04 C05 9SL sing 4 n n C04 O03 9SL sing 5 n n C12 N11 9SL doub 6 n n C14 C05 9SL sing 7 n n C14 C10 9SL sing 8 n n O01 C02 9SL doub 9 n n C05 N06 9SL sing 10 n n O03 C02 9SL sing 11 n n C02 N21 9SL sing 12 n n O17 C16 9SL sing 13 n n N11 C10 9SL sing 14 n n C10 C16 9SL sing 15 n n C10 N09 9SL sing 16 n n N06 C07 9SL doub 17 n n O18 C16 9SL sing 18 n n C16 C19 9SL sing 19 n n N09 C07 9SL sing 20 n n N09 C20 9SL sing 21 n n C07 N08 9SL sing 22 n n C19 C20 9SL sing 23 n n C20 H1 9SL sing 24 n n C20 H2 9SL sing 25 n n C04 H3 9SL sing 26 n n C04 H4 9SL sing 27 n n C05 H5 9SL sing 28 n n N08 H6 9SL sing 29 n n N08 H7 9SL sing 30 n n C14 H9 9SL sing 31 n n N15 H10 9SL sing 32 n n N15 H11 9SL sing 33 n n O17 H12 9SL sing 34 n n O18 H13 9SL sing 35 n n C19 H14 9SL sing 36 n n C19 H15 9SL sing 37 n n N21 H16 9SL sing 38 n n N21 H17 9SL sing 39 n n N13 H8 9SL sing 40 n n # _atom_sites.entry_id 7W9T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 9SL A 1 2001 1901 9SL STX . H 6 NAG A 1 2002 2006 NAG NAG . I 7 P5S A 1 2003 2012 P5S P5S . J 8 Y01 A 1 2004 2015 Y01 Y01 . K 8 Y01 A 1 2005 2016 Y01 Y01 . L 8 Y01 A 1 2006 2017 Y01 Y01 . M 9 9Z9 A 1 2007 2019 9Z9 9Z9 . N 6 NAG A 1 2008 2021 NAG NAG . O 8 Y01 A 1 2009 2022 Y01 Y01 . P 10 LPE A 1 2010 2009 LPE LPE . Q 10 LPE A 1 2011 2010 LPE LPE . R 10 LPE A 1 2012 2012 LPE LPE . S 11 PCW A 1 2013 2013 PCW PCW . T 10 LPE A 1 2014 2014 LPE LPE . U 10 LPE A 1 2015 2015 LPE LPE . V 11 PCW A 1 2016 2016 PCW PCW . W 7 P5S A 1 2017 2017 P5S LPE . X 11 PCW A 1 2018 2018 PCW PCW . Y 10 LPE A 1 2019 2019 LPE LPE . Z 10 LPE A 1 2020 2020 LPE LPE . AA 10 LPE A 1 2021 2021 LPE LPE . BA 10 LPE A 1 2022 2022 LPE LPE . CA 10 LPE A 1 2023 2023 LPE LPE . DA 10 LPE A 1 2024 2024 LPE LPE . EA 10 LPE A 1 2025 2031 LPE LPE . FA 10 LPE A 1 2026 2032 LPE LPE . GA 11 PCW A 1 2027 2035 PCW PCW . HA 11 PCW A 1 2028 2036 PCW PCW . IA 8 Y01 A 1 2029 2040 Y01 Y01 . JA 6 NAG B 1 301 301 NAG NAG . KA 6 NAG B 1 302 302 NAG NAG . LA 6 NAG B 1 303 303 NAG NAG . MA 10 LPE B 1 304 306 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9SL . . . G 5 134.944 131.985 143.012 1 26.23 ? C10 9SL 2001 A 1 HETATM 2 C C20 9SL . . . G 5 134.535 131.506 145.246 1 26.23 ? C20 9SL 2001 A 1 HETATM 3 O O01 9SL . . . G 5 139.161 132.322 142.475 1 26.23 ? O01 9SL 2001 A 1 HETATM 4 C C02 9SL . . . G 5 138.961 133.163 143.261 1 26.23 ? C02 9SL 2001 A 1 HETATM 5 O O03 9SL . . . G 5 138.457 134.398 142.867 1 26.23 ? O03 9SL 2001 A 1 HETATM 6 C C04 9SL . . . G 5 137.511 134.38 141.831 1 26.23 ? C04 9SL 2001 A 1 HETATM 7 C C05 9SL . . . G 5 136.076 134.296 142.337 1 26.23 ? C05 9SL 2001 A 1 HETATM 8 N N06 9SL . . . G 5 136.047 134.595 143.737 1 26.23 ? N06 9SL 2001 A 1 HETATM 9 C C07 9SL . . . G 5 135.588 133.745 144.673 1 26.23 ? C07 9SL 2001 A 1 HETATM 10 N N08 9SL . . . G 5 135.625 134.113 146.073 1 26.23 ? N08 9SL 2001 A 1 HETATM 11 N N09 9SL . . . G 5 135.065 132.543 144.324 1 26.23 ? N09 9SL 2001 A 1 HETATM 12 N N11 9SL . . . G 5 133.591 131.764 142.644 1 26.23 ? N11 9SL 2001 A 1 HETATM 13 C C12 9SL . . . G 5 133.342 132.427 141.318 1 26.23 ? C12 9SL 2001 A 1 HETATM 14 N N13 9SL . . . G 5 134.611 133.076 140.892 1 26.23 ? N13 9SL 2001 A 1 HETATM 15 C C14 9SL . . . G 5 135.585 132.834 141.894 1 26.23 ? C14 9SL 2001 A 1 HETATM 16 N N15 9SL . . . G 5 132.103 132.445 140.571 1 26.23 ? N15 9SL 2001 A 1 HETATM 17 C C16 9SL . . . G 5 135.569 130.621 143.262 1 26.23 ? C16 9SL 2001 A 1 HETATM 18 O O17 9SL . . . G 5 135.293 129.731 142.226 1 26.23 ? O17 9SL 2001 A 1 HETATM 19 O O18 9SL . . . G 5 136.934 130.701 143.502 1 26.23 ? O18 9SL 2001 A 1 HETATM 20 C C19 9SL . . . G 5 134.901 130.188 144.566 1 26.23 ? C19 9SL 2001 A 1 HETATM 21 N N21 9SL . . . G 5 139.256 132.894 144.647 1 26.23 ? N21 9SL 2001 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 558 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #