data_7WA0
#
_model_server_result.job_id            jApp5rA3pZw54_LQ1elRzQ 
_model_server_result.datetime_utc      '2024-10-20 00:35:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wa0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7WA0 
#
_exptl.entry_id    7WA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WA0 
_cell.length_a            54.58 
_cell.length_b            58.31 
_cell.length_c            67.35 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A O ASN 54 A ASN 77 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc3 A O VAL 57 A VAL 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc5 D CA CA . A CA 303 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc6 D CA CA . A CA 303 1_555 E O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     7WA0 
_atom_sites.fract_transf_matrix[1][1]    0.018322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEN A 1 301 324 BEN BAM . 
C 3 DMS A 1 302 325 DMS DMS . 
D 4 CA A 1 303 1 CA CA . 
E 5 HOH A 1 401 11 HOH HOH . 
E 5 HOH A 2 402 80 HOH HOH . 
E 5 HOH A 3 403 76 HOH HOH . 
E 5 HOH A 4 404 46 HOH HOH . 
E 5 HOH A 5 405 65 HOH HOH . 
E 5 HOH A 6 406 63 HOH HOH . 
E 5 HOH A 7 407 42 HOH HOH . 
E 5 HOH A 8 408 48 HOH HOH . 
E 5 HOH A 9 409 87 HOH HOH . 
E 5 HOH A 10 410 39 HOH HOH . 
E 5 HOH A 11 411 71 HOH HOH . 
E 5 HOH A 12 412 45 HOH HOH . 
E 5 HOH A 13 413 35 HOH HOH . 
E 5 HOH A 14 414 31 HOH HOH . 
E 5 HOH A 15 415 21 HOH HOH . 
E 5 HOH A 16 416 5 HOH HOH . 
E 5 HOH A 17 417 36 HOH HOH . 
E 5 HOH A 18 418 44 HOH HOH . 
E 5 HOH A 19 419 26 HOH HOH . 
E 5 HOH A 20 420 8 HOH HOH . 
E 5 HOH A 21 421 52 HOH HOH . 
E 5 HOH A 22 422 13 HOH HOH . 
E 5 HOH A 23 423 2 HOH HOH . 
E 5 HOH A 24 424 27 HOH HOH . 
E 5 HOH A 25 425 16 HOH HOH . 
E 5 HOH A 26 426 4 HOH HOH . 
E 5 HOH A 27 427 75 HOH HOH . 
E 5 HOH A 28 428 3 HOH HOH . 
E 5 HOH A 29 429 84 HOH HOH . 
E 5 HOH A 30 430 81 HOH HOH . 
E 5 HOH A 31 431 6 HOH HOH . 
E 5 HOH A 32 432 29 HOH HOH . 
E 5 HOH A 33 433 14 HOH HOH . 
E 5 HOH A 34 434 53 HOH HOH . 
E 5 HOH A 35 435 12 HOH HOH . 
E 5 HOH A 36 436 9 HOH HOH . 
E 5 HOH A 37 437 30 HOH HOH . 
E 5 HOH A 38 438 68 HOH HOH . 
E 5 HOH A 39 439 24 HOH HOH . 
E 5 HOH A 40 440 73 HOH HOH . 
E 5 HOH A 41 441 40 HOH HOH . 
E 5 HOH A 42 442 49 HOH HOH . 
E 5 HOH A 43 443 32 HOH HOH . 
E 5 HOH A 44 444 37 HOH HOH . 
E 5 HOH A 45 445 43 HOH HOH . 
E 5 HOH A 46 446 10 HOH HOH . 
E 5 HOH A 47 447 15 HOH HOH . 
E 5 HOH A 48 448 22 HOH HOH . 
E 5 HOH A 49 449 19 HOH HOH . 
E 5 HOH A 50 450 79 HOH HOH . 
E 5 HOH A 51 451 18 HOH HOH . 
E 5 HOH A 52 452 55 HOH HOH . 
E 5 HOH A 53 453 23 HOH HOH . 
E 5 HOH A 54 454 72 HOH HOH . 
E 5 HOH A 55 455 86 HOH HOH . 
E 5 HOH A 56 456 41 HOH HOH . 
E 5 HOH A 57 457 34 HOH HOH . 
E 5 HOH A 58 458 60 HOH HOH . 
E 5 HOH A 59 459 20 HOH HOH . 
E 5 HOH A 60 460 28 HOH HOH . 
E 5 HOH A 61 461 57 HOH HOH . 
E 5 HOH A 62 462 38 HOH HOH . 
E 5 HOH A 63 463 17 HOH HOH . 
E 5 HOH A 64 464 59 HOH HOH . 
E 5 HOH A 65 465 7 HOH HOH . 
E 5 HOH A 66 466 83 HOH HOH . 
E 5 HOH A 67 467 50 HOH HOH . 
E 5 HOH A 68 468 58 HOH HOH . 
E 5 HOH A 69 469 78 HOH HOH . 
E 5 HOH A 70 470 56 HOH HOH . 
E 5 HOH A 71 471 51 HOH HOH . 
E 5 HOH A 72 472 61 HOH HOH . 
E 5 HOH A 73 473 69 HOH HOH . 
E 5 HOH A 74 474 54 HOH HOH . 
E 5 HOH A 75 475 1 HOH HOH . 
E 5 HOH A 76 476 77 HOH HOH . 
E 5 HOH A 77 477 62 HOH HOH . 
E 5 HOH A 78 478 64 HOH HOH . 
E 5 HOH A 79 479 67 HOH HOH . 
E 5 HOH A 80 480 25 HOH HOH . 
E 5 HOH A 81 481 66 HOH HOH . 
E 5 HOH A 82 482 70 HOH HOH . 
E 5 HOH A 83 483 33 HOH HOH . 
E 5 HOH A 84 484 82 HOH HOH . 
E 5 HOH A 85 485 85 HOH HOH . 
E 5 HOH A 86 486 47 HOH HOH . 
E 5 HOH A 87 487 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . B 2 25.497 43.408 16.757 1 17.15 ? C1 BEN 301 A 1 
HETATM 2 C C2 BEN . . . B 2 25.231 44.767 16.864 1 18.23 ? C2 BEN 301 A 1 
HETATM 3 C C3 BEN . . . B 2 25.482 45.435 18.038 1 19.81 ? C3 BEN 301 A 1 
HETATM 4 C C4 BEN . . . B 2 26.051 44.776 19.09 1 21.31 ? C4 BEN 301 A 1 
HETATM 5 C C5 BEN . . . B 2 26.321 43.43 19.002 1 20.22 ? C5 BEN 301 A 1 
HETATM 6 C C6 BEN . . . B 2 26.068 42.747 17.83 1 17.99 ? C6 BEN 301 A 1 
HETATM 7 C C BEN . . . B 2 25.182 42.68 15.513 1 15.86 ? C BEN 301 A 1 
HETATM 8 N N1 BEN . . . B 2 24.527 43.193 14.525 1 19.17 ? N1 BEN 301 A 1 
HETATM 9 N N2 BEN . . . B 2 25.603 41.397 15.461 1 19.13 ? N2 BEN 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#