data_7WA0 # _model_server_result.job_id wlpc0Y1f3xiyqaaCQTDCBA _model_server_result.datetime_utc '2024-10-20 00:25:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7WA0 # _exptl.entry_id 7WA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WA0 _cell.length_a 54.58 _cell.length_b 58.31 _cell.length_c 67.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 D CA CA . A CA 303 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 D CA CA . A CA 303 1_555 E O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 100 n n S C1 DMS sing 101 n n S C2 DMS sing 102 n n C1 H11 DMS sing 103 n n C1 H12 DMS sing 104 n n C1 H13 DMS sing 105 n n C2 H21 DMS sing 106 n n C2 H22 DMS sing 107 n n C2 H23 DMS sing 108 n n # _atom_sites.entry_id 7WA0 _atom_sites.fract_transf_matrix[1][1] 0.018322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 301 324 BEN BAM . C 3 DMS A 1 302 325 DMS DMS . D 4 CA A 1 303 1 CA CA . E 5 HOH A 1 401 11 HOH HOH . E 5 HOH A 2 402 80 HOH HOH . E 5 HOH A 3 403 76 HOH HOH . E 5 HOH A 4 404 46 HOH HOH . E 5 HOH A 5 405 65 HOH HOH . E 5 HOH A 6 406 63 HOH HOH . E 5 HOH A 7 407 42 HOH HOH . E 5 HOH A 8 408 48 HOH HOH . E 5 HOH A 9 409 87 HOH HOH . E 5 HOH A 10 410 39 HOH HOH . E 5 HOH A 11 411 71 HOH HOH . E 5 HOH A 12 412 45 HOH HOH . E 5 HOH A 13 413 35 HOH HOH . E 5 HOH A 14 414 31 HOH HOH . E 5 HOH A 15 415 21 HOH HOH . E 5 HOH A 16 416 5 HOH HOH . E 5 HOH A 17 417 36 HOH HOH . E 5 HOH A 18 418 44 HOH HOH . E 5 HOH A 19 419 26 HOH HOH . E 5 HOH A 20 420 8 HOH HOH . E 5 HOH A 21 421 52 HOH HOH . E 5 HOH A 22 422 13 HOH HOH . E 5 HOH A 23 423 2 HOH HOH . E 5 HOH A 24 424 27 HOH HOH . E 5 HOH A 25 425 16 HOH HOH . E 5 HOH A 26 426 4 HOH HOH . E 5 HOH A 27 427 75 HOH HOH . E 5 HOH A 28 428 3 HOH HOH . E 5 HOH A 29 429 84 HOH HOH . E 5 HOH A 30 430 81 HOH HOH . E 5 HOH A 31 431 6 HOH HOH . E 5 HOH A 32 432 29 HOH HOH . E 5 HOH A 33 433 14 HOH HOH . E 5 HOH A 34 434 53 HOH HOH . E 5 HOH A 35 435 12 HOH HOH . E 5 HOH A 36 436 9 HOH HOH . E 5 HOH A 37 437 30 HOH HOH . E 5 HOH A 38 438 68 HOH HOH . E 5 HOH A 39 439 24 HOH HOH . E 5 HOH A 40 440 73 HOH HOH . E 5 HOH A 41 441 40 HOH HOH . E 5 HOH A 42 442 49 HOH HOH . E 5 HOH A 43 443 32 HOH HOH . E 5 HOH A 44 444 37 HOH HOH . E 5 HOH A 45 445 43 HOH HOH . E 5 HOH A 46 446 10 HOH HOH . E 5 HOH A 47 447 15 HOH HOH . E 5 HOH A 48 448 22 HOH HOH . E 5 HOH A 49 449 19 HOH HOH . E 5 HOH A 50 450 79 HOH HOH . E 5 HOH A 51 451 18 HOH HOH . E 5 HOH A 52 452 55 HOH HOH . E 5 HOH A 53 453 23 HOH HOH . E 5 HOH A 54 454 72 HOH HOH . E 5 HOH A 55 455 86 HOH HOH . E 5 HOH A 56 456 41 HOH HOH . E 5 HOH A 57 457 34 HOH HOH . E 5 HOH A 58 458 60 HOH HOH . E 5 HOH A 59 459 20 HOH HOH . E 5 HOH A 60 460 28 HOH HOH . E 5 HOH A 61 461 57 HOH HOH . E 5 HOH A 62 462 38 HOH HOH . E 5 HOH A 63 463 17 HOH HOH . E 5 HOH A 64 464 59 HOH HOH . E 5 HOH A 65 465 7 HOH HOH . E 5 HOH A 66 466 83 HOH HOH . E 5 HOH A 67 467 50 HOH HOH . E 5 HOH A 68 468 58 HOH HOH . E 5 HOH A 69 469 78 HOH HOH . E 5 HOH A 70 470 56 HOH HOH . E 5 HOH A 71 471 51 HOH HOH . E 5 HOH A 72 472 61 HOH HOH . E 5 HOH A 73 473 69 HOH HOH . E 5 HOH A 74 474 54 HOH HOH . E 5 HOH A 75 475 1 HOH HOH . E 5 HOH A 76 476 77 HOH HOH . E 5 HOH A 77 477 62 HOH HOH . E 5 HOH A 78 478 64 HOH HOH . E 5 HOH A 79 479 67 HOH HOH . E 5 HOH A 80 480 25 HOH HOH . E 5 HOH A 81 481 66 HOH HOH . E 5 HOH A 82 482 70 HOH HOH . E 5 HOH A 83 483 33 HOH HOH . E 5 HOH A 84 484 82 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . E 5 HOH A 86 486 47 HOH HOH . E 5 HOH A 87 487 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 16.512 37.941 39.394 1 30.04 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 17.881 37.453 39.741 1 34.96 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 16.707 39.672 38.873 1 30.78 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 15.667 38.26 40.958 1 36.56 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #