data_7WB7 # _model_server_result.job_id k0z5ibzSlR5_eBXBxqZGmQ _model_server_result.datetime_utc '2024-11-17 19:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7WB7 # _exptl.entry_id 7WB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WB7 _cell.length_a 54.66 _cell.length_b 58.17 _cell.length_c 67.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 D CA CA . A CA 303 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 D CA CA . A CA 303 1_555 E O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 299 n n OH HOH SRO sing 300 n n CZ3 CE3 SRO doub 301 n y CZ3 CH2 SRO sing 302 n y CH2 CZ2 SRO doub 303 n y CH2 HH2 SRO sing 304 n n CZ2 CE2 SRO sing 305 n y CZ2 HZ2 SRO sing 306 n n CE2 NE1 SRO sing 307 n y CE2 CD2 SRO doub 308 n y NE1 CD1 SRO sing 309 n y NE1 HNE1 SRO sing 310 n n CD1 CG SRO doub 311 n y CD1 HD1 SRO sing 312 n n CG CB SRO sing 313 n n CG CD2 SRO sing 314 n y CD2 CE3 SRO sing 315 n y CE3 HE3 SRO sing 316 n n CB CA SRO sing 317 n n CB HB1 SRO sing 318 n n CB HB2 SRO sing 319 n n CA NZ SRO sing 320 n n CA HA1 SRO sing 321 n n CA HA2 SRO sing 322 n n NZ HNZ1 SRO sing 323 n n NZ HNZ2 SRO sing 324 n n # _atom_sites.entry_id 7WB7 _atom_sites.fract_transf_matrix[1][1] 0.018295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SRO A 1 301 324 SRO SRO . C 3 DMS A 1 302 325 DMS DMS . D 4 CA A 1 303 1 CA CA . E 5 HOH A 1 401 72 HOH HOH . E 5 HOH A 2 402 1 HOH HOH . E 5 HOH A 3 403 129 HOH HOH . E 5 HOH A 4 404 55 HOH HOH . E 5 HOH A 5 405 38 HOH HOH . E 5 HOH A 6 406 26 HOH HOH . E 5 HOH A 7 407 87 HOH HOH . E 5 HOH A 8 408 6 HOH HOH . E 5 HOH A 9 409 82 HOH HOH . E 5 HOH A 10 410 40 HOH HOH . E 5 HOH A 11 411 43 HOH HOH . E 5 HOH A 12 412 9 HOH HOH . E 5 HOH A 13 413 122 HOH HOH . E 5 HOH A 14 414 29 HOH HOH . E 5 HOH A 15 415 35 HOH HOH . E 5 HOH A 16 416 121 HOH HOH . E 5 HOH A 17 417 39 HOH HOH . E 5 HOH A 18 418 83 HOH HOH . E 5 HOH A 19 419 128 HOH HOH . E 5 HOH A 20 420 85 HOH HOH . E 5 HOH A 21 421 50 HOH HOH . E 5 HOH A 22 422 91 HOH HOH . E 5 HOH A 23 423 84 HOH HOH . E 5 HOH A 24 424 125 HOH HOH . E 5 HOH A 25 425 100 HOH HOH . E 5 HOH A 26 426 30 HOH HOH . E 5 HOH A 27 427 20 HOH HOH . E 5 HOH A 28 428 44 HOH HOH . E 5 HOH A 29 429 52 HOH HOH . E 5 HOH A 30 430 51 HOH HOH . E 5 HOH A 31 431 5 HOH HOH . E 5 HOH A 32 432 67 HOH HOH . E 5 HOH A 33 433 61 HOH HOH . E 5 HOH A 34 434 11 HOH HOH . E 5 HOH A 35 435 14 HOH HOH . E 5 HOH A 36 436 10 HOH HOH . E 5 HOH A 37 437 59 HOH HOH . E 5 HOH A 38 438 76 HOH HOH . E 5 HOH A 39 439 116 HOH HOH . E 5 HOH A 40 440 102 HOH HOH . E 5 HOH A 41 441 25 HOH HOH . E 5 HOH A 42 442 114 HOH HOH . E 5 HOH A 43 443 24 HOH HOH . E 5 HOH A 44 444 13 HOH HOH . E 5 HOH A 45 445 109 HOH HOH . E 5 HOH A 46 446 4 HOH HOH . E 5 HOH A 47 447 112 HOH HOH . E 5 HOH A 48 448 41 HOH HOH . E 5 HOH A 49 449 66 HOH HOH . E 5 HOH A 50 450 2 HOH HOH . E 5 HOH A 51 451 75 HOH HOH . E 5 HOH A 52 452 36 HOH HOH . E 5 HOH A 53 453 115 HOH HOH . E 5 HOH A 54 454 118 HOH HOH . E 5 HOH A 55 455 28 HOH HOH . E 5 HOH A 56 456 96 HOH HOH . E 5 HOH A 57 457 123 HOH HOH . E 5 HOH A 58 458 81 HOH HOH . E 5 HOH A 59 459 60 HOH HOH . E 5 HOH A 60 460 79 HOH HOH . E 5 HOH A 61 461 3 HOH HOH . E 5 HOH A 62 462 73 HOH HOH . E 5 HOH A 63 463 21 HOH HOH . E 5 HOH A 64 464 32 HOH HOH . E 5 HOH A 65 465 33 HOH HOH . E 5 HOH A 66 466 22 HOH HOH . E 5 HOH A 67 467 12 HOH HOH . E 5 HOH A 68 468 15 HOH HOH . E 5 HOH A 69 469 16 HOH HOH . E 5 HOH A 70 470 124 HOH HOH . E 5 HOH A 71 471 31 HOH HOH . E 5 HOH A 72 472 78 HOH HOH . E 5 HOH A 73 473 49 HOH HOH . E 5 HOH A 74 474 111 HOH HOH . E 5 HOH A 75 475 105 HOH HOH . E 5 HOH A 76 476 70 HOH HOH . E 5 HOH A 77 477 88 HOH HOH . E 5 HOH A 78 478 77 HOH HOH . E 5 HOH A 79 479 47 HOH HOH . E 5 HOH A 80 480 93 HOH HOH . E 5 HOH A 81 481 18 HOH HOH . E 5 HOH A 82 482 48 HOH HOH . E 5 HOH A 83 483 23 HOH HOH . E 5 HOH A 84 484 120 HOH HOH . E 5 HOH A 85 485 74 HOH HOH . E 5 HOH A 86 486 127 HOH HOH . E 5 HOH A 87 487 89 HOH HOH . E 5 HOH A 88 488 27 HOH HOH . E 5 HOH A 89 489 119 HOH HOH . E 5 HOH A 90 490 92 HOH HOH . E 5 HOH A 91 491 80 HOH HOH . E 5 HOH A 92 492 37 HOH HOH . E 5 HOH A 93 493 19 HOH HOH . E 5 HOH A 94 494 58 HOH HOH . E 5 HOH A 95 495 62 HOH HOH . E 5 HOH A 96 496 98 HOH HOH . E 5 HOH A 97 497 108 HOH HOH . E 5 HOH A 98 498 17 HOH HOH . E 5 HOH A 99 499 45 HOH HOH . E 5 HOH A 100 500 130 HOH HOH . E 5 HOH A 101 501 53 HOH HOH . E 5 HOH A 102 502 107 HOH HOH . E 5 HOH A 103 503 8 HOH HOH . E 5 HOH A 104 504 7 HOH HOH . E 5 HOH A 105 505 34 HOH HOH . E 5 HOH A 106 506 57 HOH HOH . E 5 HOH A 107 507 97 HOH HOH . E 5 HOH A 108 508 63 HOH HOH . E 5 HOH A 109 509 64 HOH HOH . E 5 HOH A 110 510 110 HOH HOH . E 5 HOH A 111 511 54 HOH HOH . E 5 HOH A 112 512 68 HOH HOH . E 5 HOH A 113 513 46 HOH HOH . E 5 HOH A 114 514 42 HOH HOH . E 5 HOH A 115 515 56 HOH HOH . E 5 HOH A 116 516 95 HOH HOH . E 5 HOH A 117 517 86 HOH HOH . E 5 HOH A 118 518 71 HOH HOH . E 5 HOH A 119 519 69 HOH HOH . E 5 HOH A 120 520 126 HOH HOH . E 5 HOH A 121 521 104 HOH HOH . E 5 HOH A 122 522 113 HOH HOH . E 5 HOH A 123 523 94 HOH HOH . E 5 HOH A 124 524 103 HOH HOH . E 5 HOH A 125 525 106 HOH HOH . E 5 HOH A 126 526 90 HOH HOH . E 5 HOH A 127 527 101 HOH HOH . E 5 HOH A 128 528 65 HOH HOH . E 5 HOH A 129 529 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . B 2 22.832 47.849 16.973 1 48.18 ? OH SRO 301 A 1 HETATM 2 C CZ3 SRO . . . B 2 23.705 47.211 17.769 1 27.52 ? CZ3 SRO 301 A 1 HETATM 3 C CH2 SRO . . . B 2 23.963 47.79 19.023 1 32.24 ? CH2 SRO 301 A 1 HETATM 4 C CZ2 SRO . . . B 2 24.867 47.216 19.881 1 28.81 ? CZ2 SRO 301 A 1 HETATM 5 C CE2 SRO . . . B 2 25.497 46.048 19.468 1 26.65 ? CE2 SRO 301 A 1 HETATM 6 N NE1 SRO . . . B 2 26.41 45.28 20.122 1 25.77 ? NE1 SRO 301 A 1 HETATM 7 C CD1 SRO . . . B 2 26.761 44.226 19.322 1 26.13 ? CD1 SRO 301 A 1 HETATM 8 C CG SRO . . . B 2 26.031 44.251 18.18 1 19.67 ? CG SRO 301 A 1 HETATM 9 C CD2 SRO . . . B 2 25.252 45.458 18.223 1 25.08 ? CD2 SRO 301 A 1 HETATM 10 C CE3 SRO . . . B 2 24.349 46.081 17.345 1 28.21 ? CE3 SRO 301 A 1 HETATM 11 C CB SRO . . . B 2 26.268 43.371 17.004 1 24.86 ? CB SRO 301 A 1 HETATM 12 C CA SRO . . . B 2 25.151 42.579 16.532 1 24.64 ? CA SRO 301 A 1 HETATM 13 N NZ SRO . . . B 2 25.587 41.82 15.413 1 19.47 ? NZ SRO 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #