data_7WBA # _model_server_result.job_id wJoCKlDnztORGa47CLwsCw _model_server_result.datetime_utc '2024-11-17 19:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7WBA # _exptl.entry_id 7WBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-INDOL-3-YL)ETHANAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WBA _cell.length_a 54.61 _cell.length_b 58.14 _cell.length_c 67.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 D CA CA . A CA 303 1_555 E O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 D CA CA . A CA 303 1_555 E O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C10 H12 N2' _chem_comp.formula_weight 160.216 _chem_comp.id TSS _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-INDOL-3-YL)ETHANAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TRYPTAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA TSS sing 343 n n N1 HN11 TSS sing 344 n n N1 HN12 TSS sing 345 n n CA CB TSS sing 346 n n CA HA1 TSS sing 347 n n CA HA2 TSS sing 348 n n CB CG TSS sing 349 n n CB HB1 TSS sing 350 n n CB HB2 TSS sing 351 n n CG CD1 TSS doub 352 n y CG CD2 TSS sing 353 n y CD1 NE1 TSS sing 354 n y CD1 HD1 TSS sing 355 n n NE1 CE2 TSS sing 356 n y NE1 HE1 TSS sing 357 n n CE2 CD2 TSS sing 358 n y CE2 CZ2 TSS doub 359 n y CD2 CE3 TSS doub 360 n y CZ2 CH2 TSS sing 361 n y CZ2 HZ2 TSS sing 362 n n CH2 CZ3 TSS doub 363 n y CH2 HH2 TSS sing 364 n n CZ3 CE3 TSS sing 365 n y CZ3 HZ3 TSS sing 366 n n CE3 HE3 TSS sing 367 n n # _atom_sites.entry_id 7WBA _atom_sites.fract_transf_matrix[1][1] 0.018312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSS A 1 301 324 TSS TSS . C 3 DMS A 1 302 325 DMS DMS . D 4 CA A 1 303 1 CA CA . E 5 HOH A 1 401 115 HOH HOH . E 5 HOH A 2 402 99 HOH HOH . E 5 HOH A 3 403 109 HOH HOH . E 5 HOH A 4 404 86 HOH HOH . E 5 HOH A 5 405 58 HOH HOH . E 5 HOH A 6 406 4 HOH HOH . E 5 HOH A 7 407 52 HOH HOH . E 5 HOH A 8 408 21 HOH HOH . E 5 HOH A 9 409 33 HOH HOH . E 5 HOH A 10 410 11 HOH HOH . E 5 HOH A 11 411 63 HOH HOH . E 5 HOH A 12 412 100 HOH HOH . E 5 HOH A 13 413 117 HOH HOH . E 5 HOH A 14 414 80 HOH HOH . E 5 HOH A 15 415 55 HOH HOH . E 5 HOH A 16 416 92 HOH HOH . E 5 HOH A 17 417 39 HOH HOH . E 5 HOH A 18 418 98 HOH HOH . E 5 HOH A 19 419 88 HOH HOH . E 5 HOH A 20 420 29 HOH HOH . E 5 HOH A 21 421 73 HOH HOH . E 5 HOH A 22 422 37 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 57 HOH HOH . E 5 HOH A 25 425 14 HOH HOH . E 5 HOH A 26 426 118 HOH HOH . E 5 HOH A 27 427 96 HOH HOH . E 5 HOH A 28 428 8 HOH HOH . E 5 HOH A 29 429 65 HOH HOH . E 5 HOH A 30 430 7 HOH HOH . E 5 HOH A 31 431 68 HOH HOH . E 5 HOH A 32 432 112 HOH HOH . E 5 HOH A 33 433 9 HOH HOH . E 5 HOH A 34 434 44 HOH HOH . E 5 HOH A 35 435 97 HOH HOH . E 5 HOH A 36 436 2 HOH HOH . E 5 HOH A 37 437 30 HOH HOH . E 5 HOH A 38 438 32 HOH HOH . E 5 HOH A 39 439 101 HOH HOH . E 5 HOH A 40 440 105 HOH HOH . E 5 HOH A 41 441 102 HOH HOH . E 5 HOH A 42 442 114 HOH HOH . E 5 HOH A 43 443 1 HOH HOH . E 5 HOH A 44 444 17 HOH HOH . E 5 HOH A 45 445 25 HOH HOH . E 5 HOH A 46 446 24 HOH HOH . E 5 HOH A 47 447 110 HOH HOH . E 5 HOH A 48 448 82 HOH HOH . E 5 HOH A 49 449 76 HOH HOH . E 5 HOH A 50 450 27 HOH HOH . E 5 HOH A 51 451 31 HOH HOH . E 5 HOH A 52 452 94 HOH HOH . E 5 HOH A 53 453 6 HOH HOH . E 5 HOH A 54 454 83 HOH HOH . E 5 HOH A 55 455 74 HOH HOH . E 5 HOH A 56 456 45 HOH HOH . E 5 HOH A 57 457 40 HOH HOH . E 5 HOH A 58 458 3 HOH HOH . E 5 HOH A 59 459 18 HOH HOH . E 5 HOH A 60 460 35 HOH HOH . E 5 HOH A 61 461 59 HOH HOH . E 5 HOH A 62 462 71 HOH HOH . E 5 HOH A 63 463 12 HOH HOH . E 5 HOH A 64 464 22 HOH HOH . E 5 HOH A 65 465 26 HOH HOH . E 5 HOH A 66 466 113 HOH HOH . E 5 HOH A 67 467 15 HOH HOH . E 5 HOH A 68 468 36 HOH HOH . E 5 HOH A 69 469 16 HOH HOH . E 5 HOH A 70 470 13 HOH HOH . E 5 HOH A 71 471 54 HOH HOH . E 5 HOH A 72 472 20 HOH HOH . E 5 HOH A 73 473 38 HOH HOH . E 5 HOH A 74 474 67 HOH HOH . E 5 HOH A 75 475 70 HOH HOH . E 5 HOH A 76 476 79 HOH HOH . E 5 HOH A 77 477 48 HOH HOH . E 5 HOH A 78 478 78 HOH HOH . E 5 HOH A 79 479 19 HOH HOH . E 5 HOH A 80 480 41 HOH HOH . E 5 HOH A 81 481 104 HOH HOH . E 5 HOH A 82 482 53 HOH HOH . E 5 HOH A 83 483 77 HOH HOH . E 5 HOH A 84 484 81 HOH HOH . E 5 HOH A 85 485 49 HOH HOH . E 5 HOH A 86 486 43 HOH HOH . E 5 HOH A 87 487 28 HOH HOH . E 5 HOH A 88 488 107 HOH HOH . E 5 HOH A 89 489 60 HOH HOH . E 5 HOH A 90 490 5 HOH HOH . E 5 HOH A 91 491 34 HOH HOH . E 5 HOH A 92 492 93 HOH HOH . E 5 HOH A 93 493 50 HOH HOH . E 5 HOH A 94 494 56 HOH HOH . E 5 HOH A 95 495 89 HOH HOH . E 5 HOH A 96 496 46 HOH HOH . E 5 HOH A 97 497 69 HOH HOH . E 5 HOH A 98 498 10 HOH HOH . E 5 HOH A 99 499 51 HOH HOH . E 5 HOH A 100 500 64 HOH HOH . E 5 HOH A 101 501 72 HOH HOH . E 5 HOH A 102 502 47 HOH HOH . E 5 HOH A 103 503 95 HOH HOH . E 5 HOH A 104 504 42 HOH HOH . E 5 HOH A 105 505 66 HOH HOH . E 5 HOH A 106 506 111 HOH HOH . E 5 HOH A 107 507 84 HOH HOH . E 5 HOH A 108 508 75 HOH HOH . E 5 HOH A 109 509 103 HOH HOH . E 5 HOH A 110 510 87 HOH HOH . E 5 HOH A 111 511 108 HOH HOH . E 5 HOH A 112 512 116 HOH HOH . E 5 HOH A 113 513 85 HOH HOH . E 5 HOH A 114 514 91 HOH HOH . E 5 HOH A 115 515 62 HOH HOH . E 5 HOH A 116 516 90 HOH HOH . E 5 HOH A 117 517 61 HOH HOH . E 5 HOH A 118 518 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TSS . . . B 2 25.571 41.679 15.544 1 16.07 ? N1 TSS 301 A 1 HETATM 2 C CA TSS . . . B 2 25.191 42.523 16.682 1 20.11 ? CA TSS 301 A 1 HETATM 3 C CB TSS . . . B 2 26.306 43.385 17.141 1 19.93 ? CB TSS 301 A 1 HETATM 4 C CG TSS . . . B 2 26.024 44.309 18.27 1 16.9 ? CG TSS 301 A 1 HETATM 5 C CD1 TSS . . . B 2 26.72 44.391 19.438 1 19.08 ? CD1 TSS 301 A 1 HETATM 6 N NE1 TSS . . . B 2 26.311 45.481 20.157 1 20.41 ? NE1 TSS 301 A 1 HETATM 7 C CE2 TSS . . . B 2 25.35 46.143 19.45 1 19.59 ? CE2 TSS 301 A 1 HETATM 8 C CD2 TSS . . . B 2 25.154 45.457 18.237 1 17.64 ? CD2 TSS 301 A 1 HETATM 9 C CZ2 TSS . . . B 2 24.655 47.303 19.776 1 21.82 ? CZ2 TSS 301 A 1 HETATM 10 C CH2 TSS . . . B 2 23.742 47.77 18.858 1 25.32 ? CH2 TSS 301 A 1 HETATM 11 C CZ3 TSS . . . B 2 23.546 47.128 17.633 1 22.38 ? CZ3 TSS 301 A 1 HETATM 12 C CE3 TSS . . . B 2 24.252 45.992 17.304 1 20.87 ? CE3 TSS 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #