data_7WC4 # _model_server_result.job_id g6pLYUAjY3FqXWIWJXXxRQ _model_server_result.datetime_utc '2024-11-08 11:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1403}' # _entry.id 7WC4 # _exptl.entry_id 7WC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC4 _cell.length_a 49.9 _cell.length_b 54.73 _cell.length_c 178.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 A OE1 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A OE1 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 A OE2 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 A OD1 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 A OD2 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7WC4 _atom_sites.fract_transf_matrix[1][1] 0.02004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1401 1401 CLR CLR . C 2 CLR A 1 1402 1701 CLR CLR . D 3 1PE A 1 1403 1801 1PE 1PE . E 4 OLC A 1 1404 2001 OLC OLC . F 4 OLC A 1 1405 2101 OLC OLC . G 4 OLC A 1 1406 2201 OLC OLC . H 2 CLR A 1 1407 2301 CLR CLR . I 5 MG A 1 1408 901 MG MG . J 6 SRO A 1 1409 2302 SRO SRO . K 7 HOH A 1 1501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 -39.966 -16.34 81.789 1 101.84 ? OH2 1PE 1403 A 1 HETATM 2 C C12 1PE . . . D 3 -40.577 -16.156 83.045 1 99.57 ? C12 1PE 1403 A 1 HETATM 3 C C22 1PE . . . D 3 -39.584 -16.224 84.162 1 100.03 ? C22 1PE 1403 A 1 HETATM 4 O OH3 1PE . . . D 3 -40.269 -16.287 85.41 1 98.05 ? OH3 1PE 1403 A 1 HETATM 5 C C13 1PE . . . D 3 -38.28 -15.761 86.584 1 78.7 ? C13 1PE 1403 A 1 HETATM 6 C C23 1PE . . . D 3 -39.446 -16.679 86.495 1 86.73 ? C23 1PE 1403 A 1 HETATM 7 O OH4 1PE . . . D 3 -37.464 -16.151 87.682 1 78.63 ? OH4 1PE 1403 A 1 HETATM 8 C C14 1PE . . . D 3 -37.435 -16.315 90.067 1 89.78 ? C14 1PE 1403 A 1 HETATM 9 C C24 1PE . . . D 3 -38.208 -16.56 88.821 1 92.03 ? C24 1PE 1403 A 1 HETATM 10 O OH5 1PE . . . D 3 -38.315 -16.462 91.183 1 96.35 ? OH5 1PE 1403 A 1 HETATM 11 C C15 1PE . . . D 3 -38.74 -16.151 93.499 1 113.44 ? C15 1PE 1403 A 1 HETATM 12 C C25 1PE . . . D 3 -37.73 -16.068 92.416 1 102.61 ? C25 1PE 1403 A 1 HETATM 13 O OH6 1PE . . . D 3 -38.081 -16.134 94.765 1 127.01 ? OH6 1PE 1403 A 1 HETATM 14 C C16 1PE . . . D 3 -38.106 -16.929 97.032 1 109.71 ? C16 1PE 1403 A 1 HETATM 15 C C26 1PE . . . D 3 -38.921 -16.581 95.827 1 124.57 ? C26 1PE 1403 A 1 HETATM 16 O OH7 1PE . . . D 3 -38.881 -17.617 98.002 1 99.85 ? OH7 1PE 1403 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #