data_7WC4 # _model_server_result.job_id FYuK2m3c6M4dE7dmG5JqqQ _model_server_result.datetime_utc '2024-11-08 11:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1409}' # _entry.id 7WC4 # _exptl.entry_id 7WC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC4 _cell.length_a 49.9 _cell.length_b 54.73 _cell.length_c 178.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 A OE1 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A OE1 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 A OE2 GLU 207 A GLU 1008 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 A OD1 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 A OD2 ASP 211 A ASP 1012 1_555 I MG MG . A MG 1408 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 468 n n OH HOH SRO sing 469 n n CZ3 CE3 SRO doub 470 n y CZ3 CH2 SRO sing 471 n y CH2 CZ2 SRO doub 472 n y CH2 HH2 SRO sing 473 n n CZ2 CE2 SRO sing 474 n y CZ2 HZ2 SRO sing 475 n n CE2 NE1 SRO sing 476 n y CE2 CD2 SRO doub 477 n y NE1 CD1 SRO sing 478 n y NE1 HNE1 SRO sing 479 n n CD1 CG SRO doub 480 n y CD1 HD1 SRO sing 481 n n CG CB SRO sing 482 n n CG CD2 SRO sing 483 n y CD2 CE3 SRO sing 484 n y CE3 HE3 SRO sing 485 n n CB CA SRO sing 486 n n CB HB1 SRO sing 487 n n CB HB2 SRO sing 488 n n CA NZ SRO sing 489 n n CA HA1 SRO sing 490 n n CA HA2 SRO sing 491 n n NZ HNZ1 SRO sing 492 n n NZ HNZ2 SRO sing 493 n n # _atom_sites.entry_id 7WC4 _atom_sites.fract_transf_matrix[1][1] 0.02004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1401 1401 CLR CLR . C 2 CLR A 1 1402 1701 CLR CLR . D 3 1PE A 1 1403 1801 1PE 1PE . E 4 OLC A 1 1404 2001 OLC OLC . F 4 OLC A 1 1405 2101 OLC OLC . G 4 OLC A 1 1406 2201 OLC OLC . H 2 CLR A 1 1407 2301 CLR CLR . I 5 MG A 1 1408 901 MG MG . J 6 SRO A 1 1409 2302 SRO SRO . K 7 HOH A 1 1501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . J 6 -29.075 -15.46 146.918 1 109.65 ? OH SRO 1409 A 1 HETATM 2 C CZ3 SRO . . . J 6 -27.829 -15.274 146.414 1 126.5 ? CZ3 SRO 1409 A 1 HETATM 3 C CH2 SRO . . . J 6 -26.892 -16.29 146.656 1 111.03 ? CH2 SRO 1409 A 1 HETATM 4 C CZ2 SRO . . . J 6 -25.608 -16.199 146.18 1 108.72 ? CZ2 SRO 1409 A 1 HETATM 5 C CE2 SRO . . . J 6 -25.265 -15.054 145.471 1 121.35 ? CE2 SRO 1409 A 1 HETATM 6 N NE1 SRO . . . J 6 -24.084 -14.693 144.891 1 109.35 ? NE1 SRO 1409 A 1 HETATM 7 C CD1 SRO . . . J 6 -24.218 -13.464 144.306 1 117.87 ? CD1 SRO 1409 A 1 HETATM 8 C CG SRO . . . J 6 -25.493 -13.007 144.462 1 136.68 ? CG SRO 1409 A 1 HETATM 9 C CD2 SRO . . . J 6 -26.184 -14.018 145.223 1 143.13 ? CD2 SRO 1409 A 1 HETATM 10 C CE3 SRO . . . J 6 -27.496 -14.144 145.707 1 146.26 ? CE3 SRO 1409 A 1 HETATM 11 C CB SRO . . . J 6 -26.069 -11.715 143.963 1 121.2 ? CB SRO 1409 A 1 HETATM 12 C CA SRO . . . J 6 -26.74 -11.811 142.588 1 97.69 ? CA SRO 1409 A 1 HETATM 13 N NZ SRO . . . J 6 -25.816 -11.736 141.441 1 79.65 ? NZ SRO 1409 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #