data_7WC5 # _model_server_result.job_id uYm1Li8iGMIDHTetiGhUbQ _model_server_result.datetime_utc '2024-11-21 14:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 7WC5 # _exptl.entry_id 7WC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC5 _cell.length_a 50.07 _cell.length_b 54.33 _cell.length_c 178.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OE1 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 A OE1 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc4 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc8 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 344 n n C10 C9 OLC doub 345 n n C10 C11 OLC sing 346 n n C9 C8 OLC sing 347 n n C17 C16 OLC sing 348 z n C11 C12 OLC sing 349 n n C8 C7 OLC sing 350 n n C24 C22 OLC sing 351 n n C24 O25 OLC sing 352 n n C16 C15 OLC sing 353 n n C12 C13 OLC sing 354 n n C7 C6 OLC sing 355 n n C15 C14 OLC sing 356 n n C13 C14 OLC sing 357 n n C6 C5 OLC sing 358 n n C5 C4 OLC sing 359 n n C4 C3 OLC sing 360 n n C3 C2 OLC sing 361 n n C2 C1 OLC sing 362 n n C21 C22 OLC sing 363 n n C21 O20 OLC sing 364 n n C1 O19 OLC doub 365 n n C1 O20 OLC sing 366 n n C22 O23 OLC sing 367 n n C18 H18 OLC sing 368 n n C18 H18A OLC sing 369 n n C18 H18B OLC sing 370 n n C10 H10 OLC sing 371 n n C9 H9 OLC sing 372 n n C17 H17 OLC sing 373 n n C17 H17A OLC sing 374 n n C11 H11 OLC sing 375 n n C11 H11A OLC sing 376 n n C8 H8 OLC sing 377 n n C8 H8A OLC sing 378 n n C24 H24 OLC sing 379 n n C24 H24A OLC sing 380 n n C16 H16 OLC sing 381 n n C16 H16A OLC sing 382 n n C12 H12 OLC sing 383 n n C12 H12A OLC sing 384 n n C7 H7 OLC sing 385 n n C7 H7A OLC sing 386 n n C15 H15 OLC sing 387 n n C15 H15A OLC sing 388 n n C13 H13 OLC sing 389 n n C13 H13A OLC sing 390 n n C6 H6 OLC sing 391 n n C6 H6A OLC sing 392 n n C14 H14 OLC sing 393 n n C14 H14A OLC sing 394 n n C5 H5 OLC sing 395 n n C5 H5A OLC sing 396 n n C4 H4 OLC sing 397 n n C4 H4A OLC sing 398 n n C3 H3 OLC sing 399 n n C3 H3A OLC sing 400 n n C2 H2 OLC sing 401 n n C2 H2A OLC sing 402 n n C21 H21 OLC sing 403 n n C21 H21A OLC sing 404 n n C22 H22 OLC sing 405 n n O25 HO25 OLC sing 406 n n O23 HO23 OLC sing 407 n n # _atom_sites.entry_id 7WC5 _atom_sites.fract_transf_matrix[1][1] 0.019972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 CLR A 1 1202 1401 CLR CLR . D 4 OLC A 1 1203 2001 OLC OLC . E 3 CLR A 1 1204 2301 CLR CLR . F 4 OLC A 1 1205 2401 OLC OLC . G 5 91Q A 1 1206 2501 91Q LIG . H 4 OLC A 1 1207 2502 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . F 4 -23.355 -26.53 149.842 1 132.73 ? C24 OLC 1205 A 1 HETATM 2 C C7 OLC . . . F 4 -24.565 -26.981 139.211 1 59.88 ? C7 OLC 1205 A 1 HETATM 3 C C6 OLC . . . F 4 -24.07 -26.565 140.595 1 70.09 ? C6 OLC 1205 A 1 HETATM 4 C C5 OLC . . . F 4 -25.066 -26.771 141.73 1 74.48 ? C5 OLC 1205 A 1 HETATM 5 C C4 OLC . . . F 4 -24.635 -26.161 143.037 1 85.37 ? C4 OLC 1205 A 1 HETATM 6 C C3 OLC . . . F 4 -25.481 -26.533 144.242 1 81.01 ? C3 OLC 1205 A 1 HETATM 7 C C2 OLC . . . F 4 -24.946 -25.935 145.51 1 93.52 ? C2 OLC 1205 A 1 HETATM 8 C C21 OLC . . . F 4 -25.732 -26.767 148.997 1 118.31 ? C21 OLC 1205 A 1 HETATM 9 C C1 OLC . . . F 4 -25.796 -26.213 146.715 1 109.07 ? C1 OLC 1205 A 1 HETATM 10 C C22 OLC . . . F 4 -24.716 -27.179 150.036 1 125.4 ? C22 OLC 1205 A 1 HETATM 11 O O19 OLC . . . F 4 -26.966 -25.924 146.822 1 165.87 ? O19 OLC 1205 A 1 HETATM 12 O O25 OLC . . . F 4 -22.702 -26.25 151.077 1 113.7 ? O25 OLC 1205 A 1 HETATM 13 O O23 OLC . . . F 4 -25.249 -26.866 151.323 1 129.81 ? O23 OLC 1205 A 1 HETATM 14 O O20 OLC . . . F 4 -25.108 -26.791 147.694 1 112.2 ? O20 OLC 1205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #