data_7WC7 # _model_server_result.job_id L7PjwNhvG7ZV4xxGH1igJA _model_server_result.datetime_utc '2024-11-27 20:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 7WC7 # _exptl.entry_id 7WC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC7 _cell.length_a 50.08 _cell.length_b 54.51 _cell.length_c 179.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A OE1 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A OE1 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc4 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc5 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 405 n n C10 C9 OLC doub 406 n n C10 C11 OLC sing 407 n n C9 C8 OLC sing 408 n n C17 C16 OLC sing 409 z n C11 C12 OLC sing 410 n n C8 C7 OLC sing 411 n n C24 C22 OLC sing 412 n n C24 O25 OLC sing 413 n n C16 C15 OLC sing 414 n n C12 C13 OLC sing 415 n n C7 C6 OLC sing 416 n n C15 C14 OLC sing 417 n n C13 C14 OLC sing 418 n n C6 C5 OLC sing 419 n n C5 C4 OLC sing 420 n n C4 C3 OLC sing 421 n n C3 C2 OLC sing 422 n n C2 C1 OLC sing 423 n n C21 C22 OLC sing 424 n n C21 O20 OLC sing 425 n n C1 O19 OLC doub 426 n n C1 O20 OLC sing 427 n n C22 O23 OLC sing 428 n n C18 H18 OLC sing 429 n n C18 H18A OLC sing 430 n n C18 H18B OLC sing 431 n n C10 H10 OLC sing 432 n n C9 H9 OLC sing 433 n n C17 H17 OLC sing 434 n n C17 H17A OLC sing 435 n n C11 H11 OLC sing 436 n n C11 H11A OLC sing 437 n n C8 H8 OLC sing 438 n n C8 H8A OLC sing 439 n n C24 H24 OLC sing 440 n n C24 H24A OLC sing 441 n n C16 H16 OLC sing 442 n n C16 H16A OLC sing 443 n n C12 H12 OLC sing 444 n n C12 H12A OLC sing 445 n n C7 H7 OLC sing 446 n n C7 H7A OLC sing 447 n n C15 H15 OLC sing 448 n n C15 H15A OLC sing 449 n n C13 H13 OLC sing 450 n n C13 H13A OLC sing 451 n n C6 H6 OLC sing 452 n n C6 H6A OLC sing 453 n n C14 H14 OLC sing 454 n n C14 H14A OLC sing 455 n n C5 H5 OLC sing 456 n n C5 H5A OLC sing 457 n n C4 H4 OLC sing 458 n n C4 H4A OLC sing 459 n n C3 H3 OLC sing 460 n n C3 H3A OLC sing 461 n n C2 H2 OLC sing 462 n n C2 H2A OLC sing 463 n n C21 H21 OLC sing 464 n n C21 H21A OLC sing 465 n n C22 H22 OLC sing 466 n n O25 HO25 OLC sing 467 n n O23 HO23 OLC sing 468 n n # _atom_sites.entry_id 7WC7 _atom_sites.fract_transf_matrix[1][1] 0.019968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 CLR A 1 1202 1401 CLR CLR . D 4 1PE A 1 1203 1801 1PE 1PE . E 5 OLC A 1 1204 2001 OLC OLC . F 5 OLC A 1 1205 2101 OLC OLC . G 5 OLC A 1 1206 2201 OLC OLC . H 5 OLC A 1 1207 2401 OLC OLC . I 5 OLC A 1 1208 2502 OLC OLC . J 6 PEG A 1 1209 2503 PEG PEG . K 6 PEG A 1 1210 2504 PEG PEG . L 6 PEG A 1 1211 2505 PEG PEG . M 7 H8G A 1 1212 2506 H8G H8G . N 8 HOH A 1 1301 2 HOH HOH . N 8 HOH A 2 1302 5 HOH HOH . N 8 HOH A 3 1303 4 HOH HOH . N 8 HOH A 4 1304 3 HOH HOH . N 8 HOH A 5 1305 6 HOH HOH . N 8 HOH A 6 1306 7 HOH HOH . N 8 HOH A 7 1307 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 5 -31.944 11.344 146.572 1 71.07 ? C18 OLC 1204 A 1 HETATM 2 C C10 OLC . . . E 5 -30.396 4.134 151.094 1 109.39 ? C10 OLC 1204 A 1 HETATM 3 C C9 OLC . . . E 5 -30.16 3.736 149.835 1 106.95 ? C9 OLC 1204 A 1 HETATM 4 C C17 OLC . . . E 5 -30.97 11.338 147.717 1 73.86 ? C17 OLC 1204 A 1 HETATM 5 C C11 OLC . . . E 5 -31.14 5.375 151.53 1 116.21 ? C11 OLC 1204 A 1 HETATM 6 C C8 OLC . . . E 5 -30.512 4.469 148.561 1 96.84 ? C8 OLC 1204 A 1 HETATM 7 C C24 OLC . . . E 5 -29.345 -2.441 143.958 1 99.4 ? C24 OLC 1204 A 1 HETATM 8 C C16 OLC . . . E 5 -30.998 10.105 148.593 1 81.73 ? C16 OLC 1204 A 1 HETATM 9 C C12 OLC . . . E 5 -30.317 6.661 151.659 1 119.96 ? C12 OLC 1204 A 1 HETATM 10 C C7 OLC . . . E 5 -30.344 3.656 147.305 1 94.41 ? C7 OLC 1204 A 1 HETATM 11 C C15 OLC . . . E 5 -29.665 9.746 149.248 1 94.42 ? C15 OLC 1204 A 1 HETATM 12 C C13 OLC . . . E 5 -30.479 7.647 150.485 1 122.41 ? C13 OLC 1204 A 1 HETATM 13 C C6 OLC . . . E 5 -30.378 4.466 146.024 1 90.25 ? C6 OLC 1204 A 1 HETATM 14 C C14 OLC . . . E 5 -29.764 8.991 150.586 1 106.52 ? C14 OLC 1204 A 1 HETATM 15 C C5 OLC . . . E 5 -31.334 3.903 145.012 1 105.6 ? C5 OLC 1204 A 1 HETATM 16 C C4 OLC . . . E 5 -31.33 4.64 143.669 1 109.06 ? C4 OLC 1204 A 1 HETATM 17 C C3 OLC . . . E 5 -31.385 3.744 142.436 1 98.8 ? C3 OLC 1204 A 1 HETATM 18 C C2 OLC . . . E 5 -30.338 2.65 142.5 1 107.61 ? C2 OLC 1204 A 1 HETATM 19 C C21 OLC . . . E 5 -29.925 -0.086 143.22 1 85.28 ? C21 OLC 1204 A 1 HETATM 20 C C1 OLC . . . E 5 -30.525 1.553 141.478 1 107.41 ? C1 OLC 1204 A 1 HETATM 21 C C22 OLC . . . E 5 -29.026 -1.291 143.039 1 94.07 ? C22 OLC 1204 A 1 HETATM 22 O O19 OLC . . . E 5 -30.807 1.846 140.348 1 94.21 ? O19 OLC 1204 A 1 HETATM 23 O O25 OLC . . . E 5 -29.295 -3.639 143.188 1 83.77 ? O25 OLC 1204 A 1 HETATM 24 O O23 OLC . . . E 5 -29.139 -1.813 141.71 1 82.71 ? O23 OLC 1204 A 1 HETATM 25 O O20 OLC . . . E 5 -30.383 0.272 141.894 1 103.16 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #