data_7WC8 # _model_server_result.job_id ObTpJvoR4uXKx4k3FT9vWQ _model_server_result.datetime_utc '2024-11-24 04:41:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1209}' # _entry.id 7WC8 # _exptl.entry_id 7WC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC8 _cell.length_a 49.47 _cell.length_b 55.33 _cell.length_c 179.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc3 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc4 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 412 n n C10 C9 OLC doub 413 n n C10 C11 OLC sing 414 n n C9 C8 OLC sing 415 n n C17 C16 OLC sing 416 z n C11 C12 OLC sing 417 n n C8 C7 OLC sing 418 n n C24 C22 OLC sing 419 n n C24 O25 OLC sing 420 n n C16 C15 OLC sing 421 n n C12 C13 OLC sing 422 n n C7 C6 OLC sing 423 n n C15 C14 OLC sing 424 n n C13 C14 OLC sing 425 n n C6 C5 OLC sing 426 n n C5 C4 OLC sing 427 n n C4 C3 OLC sing 428 n n C3 C2 OLC sing 429 n n C2 C1 OLC sing 430 n n C21 C22 OLC sing 431 n n C21 O20 OLC sing 432 n n C1 O19 OLC doub 433 n n C1 O20 OLC sing 434 n n C22 O23 OLC sing 435 n n C18 H18 OLC sing 436 n n C18 H18A OLC sing 437 n n C18 H18B OLC sing 438 n n C10 H10 OLC sing 439 n n C9 H9 OLC sing 440 n n C17 H17 OLC sing 441 n n C17 H17A OLC sing 442 n n C11 H11 OLC sing 443 n n C11 H11A OLC sing 444 n n C8 H8 OLC sing 445 n n C8 H8A OLC sing 446 n n C24 H24 OLC sing 447 n n C24 H24A OLC sing 448 n n C16 H16 OLC sing 449 n n C16 H16A OLC sing 450 n n C12 H12 OLC sing 451 n n C12 H12A OLC sing 452 n n C7 H7 OLC sing 453 n n C7 H7A OLC sing 454 n n C15 H15 OLC sing 455 n n C15 H15A OLC sing 456 n n C13 H13 OLC sing 457 n n C13 H13A OLC sing 458 n n C6 H6 OLC sing 459 n n C6 H6A OLC sing 460 n n C14 H14 OLC sing 461 n n C14 H14A OLC sing 462 n n C5 H5 OLC sing 463 n n C5 H5A OLC sing 464 n n C4 H4 OLC sing 465 n n C4 H4A OLC sing 466 n n C3 H3 OLC sing 467 n n C3 H3A OLC sing 468 n n C2 H2 OLC sing 469 n n C2 H2A OLC sing 470 n n C21 H21 OLC sing 471 n n C21 H21A OLC sing 472 n n C22 H22 OLC sing 473 n n O25 HO25 OLC sing 474 n n O23 HO23 OLC sing 475 n n # _atom_sites.entry_id 7WC8 _atom_sites.fract_transf_matrix[1][1] 0.020214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 CLR A 1 1202 1401 CLR CLR . D 4 1PE A 1 1203 1801 1PE 1PE . E 5 OLC A 1 1204 2001 OLC OLC . F 5 OLC A 1 1205 2101 OLC OLC . G 5 OLC A 1 1206 2401 OLC OLC . H 6 92S A 1 1207 2501 92S LIG . I 5 OLC A 1 1208 2502 OLC OLC . J 5 OLC A 1 1209 2503 OLC OLC . K 5 OLC A 1 1210 2504 OLC OLC . L 3 CLR A 1 1211 2506 CLR CLR . M 5 OLC A 1 1212 2507 OLC OLC . N 3 CLR A 1 1213 2509 CLR CLR . O 5 OLC A 1 1214 2511 OLC OLC . P 5 OLC A 1 1215 2512 OLC OLC . Q 5 OLC A 1 1216 2513 OLC OLC . R 3 CLR A 1 1217 2514 CLR CLR . S 5 OLC A 1 1218 2515 OLC OLC . T 7 PEG A 1 1219 2516 PEG PEG . U 8 HOH A 1 1301 2 HOH HOH . U 8 HOH A 2 1302 1 HOH HOH . U 8 HOH A 3 1303 9 HOH HOH . U 8 HOH A 4 1304 6 HOH HOH . U 8 HOH A 5 1305 4 HOH HOH . U 8 HOH A 6 1306 5 HOH HOH . U 8 HOH A 7 1307 10 HOH HOH . U 8 HOH A 8 1308 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . J 5 -20.31 -25.971 126.463 1 100.31 ? C9 OLC 1209 A 1 HETATM 2 C C8 OLC . . . J 5 -20.067 -25.406 125.088 1 93.78 ? C8 OLC 1209 A 1 HETATM 3 C C24 OLC . . . J 5 -18.682 -29.189 115.501 1 131.8 ? C24 OLC 1209 A 1 HETATM 4 C C7 OLC . . . J 5 -18.63 -25.02 124.811 1 102.7 ? C7 OLC 1209 A 1 HETATM 5 C C6 OLC . . . J 5 -18.358 -24.509 123.395 1 103.81 ? C6 OLC 1209 A 1 HETATM 6 C C5 OLC . . . J 5 -18.21 -25.598 122.358 1 102.08 ? C5 OLC 1209 A 1 HETATM 7 C C4 OLC . . . J 5 -16.92 -25.564 121.59 1 102.98 ? C4 OLC 1209 A 1 HETATM 8 C C3 OLC . . . J 5 -16.547 -26.901 120.96 1 116.5 ? C3 OLC 1209 A 1 HETATM 9 C C2 OLC . . . J 5 -17.333 -27.203 119.683 1 112.24 ? C2 OLC 1209 A 1 HETATM 10 C C21 OLC . . . J 5 -16.571 -27.909 116.111 1 115.65 ? C21 OLC 1209 A 1 HETATM 11 C C1 OLC . . . J 5 -16.469 -27.348 118.446 1 106.06 ? C1 OLC 1209 A 1 HETATM 12 C C22 OLC . . . J 5 -17.225 -28.91 115.168 1 126.17 ? C22 OLC 1209 A 1 HETATM 13 O O19 OLC . . . J 5 -15.441 -26.758 118.356 1 136.36 ? O19 OLC 1209 A 1 HETATM 14 O O25 OLC . . . J 5 -19.324 -30.055 114.557 1 113.64 ? O25 OLC 1209 A 1 HETATM 15 O O23 OLC . . . J 5 -17.122 -28.456 113.812 1 110.42 ? O23 OLC 1209 A 1 HETATM 16 O O20 OLC . . . J 5 -16.951 -28.164 117.494 1 118.79 ? O20 OLC 1209 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 16 #