data_7WC9 # _model_server_result.job_id zlUukf73bjBh9KfhpVTOuQ _model_server_result.datetime_utc '2024-11-22 20:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 7WC9 # _exptl.entry_id 7WC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WC9 _cell.length_a 49.53 _cell.length_b 54.95 _cell.length_c 179.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc3 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc4 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 414 n n C10 C9 OLC doub 415 n n C10 C11 OLC sing 416 n n C9 C8 OLC sing 417 n n C17 C16 OLC sing 418 z n C11 C12 OLC sing 419 n n C8 C7 OLC sing 420 n n C24 C22 OLC sing 421 n n C24 O25 OLC sing 422 n n C16 C15 OLC sing 423 n n C12 C13 OLC sing 424 n n C7 C6 OLC sing 425 n n C15 C14 OLC sing 426 n n C13 C14 OLC sing 427 n n C6 C5 OLC sing 428 n n C5 C4 OLC sing 429 n n C4 C3 OLC sing 430 n n C3 C2 OLC sing 431 n n C2 C1 OLC sing 432 n n C21 C22 OLC sing 433 n n C21 O20 OLC sing 434 n n C1 O19 OLC doub 435 n n C1 O20 OLC sing 436 n n C22 O23 OLC sing 437 n n C18 H18 OLC sing 438 n n C18 H18A OLC sing 439 n n C18 H18B OLC sing 440 n n C10 H10 OLC sing 441 n n C9 H9 OLC sing 442 n n C17 H17 OLC sing 443 n n C17 H17A OLC sing 444 n n C11 H11 OLC sing 445 n n C11 H11A OLC sing 446 n n C8 H8 OLC sing 447 n n C8 H8A OLC sing 448 n n C24 H24 OLC sing 449 n n C24 H24A OLC sing 450 n n C16 H16 OLC sing 451 n n C16 H16A OLC sing 452 n n C12 H12 OLC sing 453 n n C12 H12A OLC sing 454 n n C7 H7 OLC sing 455 n n C7 H7A OLC sing 456 n n C15 H15 OLC sing 457 n n C15 H15A OLC sing 458 n n C13 H13 OLC sing 459 n n C13 H13A OLC sing 460 n n C6 H6 OLC sing 461 n n C6 H6A OLC sing 462 n n C14 H14 OLC sing 463 n n C14 H14A OLC sing 464 n n C5 H5 OLC sing 465 n n C5 H5A OLC sing 466 n n C4 H4 OLC sing 467 n n C4 H4A OLC sing 468 n n C3 H3 OLC sing 469 n n C3 H3A OLC sing 470 n n C2 H2 OLC sing 471 n n C2 H2A OLC sing 472 n n C21 H21 OLC sing 473 n n C21 H21A OLC sing 474 n n C22 H22 OLC sing 475 n n O25 HO25 OLC sing 476 n n O23 HO23 OLC sing 477 n n # _atom_sites.entry_id 7WC9 _atom_sites.fract_transf_matrix[1][1] 0.02019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 CLR A 1 1202 1401 CLR CLR . D 3 CLR A 1 1203 1701 CLR CLR . E 4 OLC A 1 1204 2101 OLC OLC . F 4 OLC A 1 1205 2201 OLC OLC . G 5 93F A 1 1206 2202 93F LIG . H 4 OLC A 1 1207 2203 OLC OLC . I 4 OLC A 1 1208 2204 OLC OLC . J 6 1PE A 1 1209 2205 1PE 1PE . K 7 PEG A 1 1210 2206 PEG PEG . L 7 PEG A 1 1211 2207 PEG PEG . M 4 OLC A 1 1212 2203 OLC OLC . N 4 OLC A 1 1213 2204 OLC OLC . O 3 CLR A 1 1214 2205 CLR CLR . P 8 HOH A 1 1301 4 HOH HOH . P 8 HOH A 2 1302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . I 4 -24.649 -26.338 138.619 1 98.44 ? C10 OLC 1208 A 1 HETATM 2 C C9 OLC . . . I 4 -23.938 -26.473 139.719 1 100.64 ? C9 OLC 1208 A 1 HETATM 3 C C11 OLC . . . I 4 -26.013 -26.911 138.377 1 88.17 ? C11 OLC 1208 A 1 HETATM 4 C C8 OLC . . . I 4 -24.32 -27.293 140.916 1 99.68 ? C8 OLC 1208 A 1 HETATM 5 C C24 OLC . . . I 4 -24.508 -26.992 154.454 1 165.45 ? C24 OLC 1208 A 1 HETATM 6 C C7 OLC . . . I 4 -24.486 -26.49 142.162 1 103.42 ? C7 OLC 1208 A 1 HETATM 7 C C6 OLC . . . I 4 -24.826 -27.313 143.403 1 103.92 ? C6 OLC 1208 A 1 HETATM 8 C C5 OLC . . . I 4 -25.038 -26.505 144.663 1 101.96 ? C5 OLC 1208 A 1 HETATM 9 C C4 OLC . . . I 4 -25.183 -27.363 145.886 1 117.18 ? C4 OLC 1208 A 1 HETATM 10 C C3 OLC . . . I 4 -25.475 -26.617 147.171 1 119 ? C3 OLC 1208 A 1 HETATM 11 C C2 OLC . . . I 4 -24.902 -27.316 148.363 1 127.83 ? C2 OLC 1208 A 1 HETATM 12 C C21 OLC . . . I 4 -25.21 -26.954 152.015 1 165.95 ? C21 OLC 1208 A 1 HETATM 13 C C1 OLC . . . I 4 -25.483 -26.89 149.678 1 145.38 ? C1 OLC 1208 A 1 HETATM 14 C C22 OLC . . . I 4 -24.13 -27.288 153.017 1 168.87 ? C22 OLC 1208 A 1 HETATM 15 O O19 OLC . . . I 4 -26.456 -26.183 149.814 1 153.29 ? O19 OLC 1208 A 1 HETATM 16 O O25 OLC . . . I 4 -23.548 -27.525 155.364 1 156.54 ? O25 OLC 1208 A 1 HETATM 17 O O23 OLC . . . I 4 -23.787 -28.667 152.876 1 174.96 ? O23 OLC 1208 A 1 HETATM 18 O O20 OLC . . . I 4 -24.759 -27.363 150.7 1 155.72 ? O20 OLC 1208 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 18 #