data_7WCQ # _model_server_result.job_id Um5LRfqq3VARKjCyb8puUA _model_server_result.datetime_utc '2024-12-06 20:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7WCQ # _exptl.entry_id 7WCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.552 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4R)-3-[(4-fluorophenyl)methyl]-1-[(4-methoxyphenyl)methyl]-3-(4-methylsulfonylphenyl)-4-oxidanyl-pyrrolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WCQ _cell.length_a 62.702 _cell.length_b 62.702 _cell.length_c 81.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.25 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H26 F N O5 S' _chem_comp.formula_weight 483.552 _chem_comp.id 8OC _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4R)-3-[(4-fluorophenyl)methyl]-1-[(4-methoxyphenyl)methyl]-3-(4-methylsulfonylphenyl)-4-oxidanyl-pyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C12 8OC sing 1 n n C10 O11 8OC sing 2 n n C12 C13 8OC sing 3 n n C12 C21 8OC sing 4 n n C12 C23 8OC sing 5 n n C13 C14 8OC sing 6 n n C14 C15 8OC doub 7 n y C14 C20 8OC sing 8 n y C15 C16 8OC sing 9 n y C01 O02 8OC sing 10 n n C03 C04 8OC doub 11 n y C03 C34 8OC sing 12 n y C03 O02 8OC sing 13 n n C04 C05 8OC sing 14 n y C05 C06 8OC doub 15 n y C06 C07 8OC sing 16 n n C06 C33 8OC sing 17 n y C07 N08 8OC sing 18 n n C09 N08 8OC sing 19 n n C16 C17 8OC doub 20 n y C17 C19 8OC sing 21 n y C17 F18 8OC sing 22 n n C19 C20 8OC doub 23 n y C21 N08 8OC sing 24 n n C21 O22 8OC doub 25 n n C23 C24 8OC doub 26 n y C23 C28 8OC sing 27 n y C24 C25 8OC sing 28 n y C25 C26 8OC doub 29 n y C26 C27 8OC sing 30 n y C26 S29 8OC sing 31 n n C27 C28 8OC doub 32 n y C30 S29 8OC sing 33 n n C33 C34 8OC doub 34 n y O31 S29 8OC doub 35 n n O32 S29 8OC doub 36 n n C10 H1 8OC sing 37 n n C13 H3 8OC sing 38 n n C13 H4 8OC sing 39 n n C15 H5 8OC sing 40 n n C01 H6 8OC sing 41 n n C01 H7 8OC sing 42 n n C01 H8 8OC sing 43 n n C04 H9 8OC sing 44 n n C05 H10 8OC sing 45 n n C07 H11 8OC sing 46 n n C07 H12 8OC sing 47 n n C09 H14 8OC sing 48 n n C09 H15 8OC sing 49 n n C16 H16 8OC sing 50 n n C19 H17 8OC sing 51 n n C20 H18 8OC sing 52 n n C24 H19 8OC sing 53 n n C25 H20 8OC sing 54 n n C27 H21 8OC sing 55 n n C28 H22 8OC sing 56 n n C30 H23 8OC sing 57 n n C30 H24 8OC sing 58 n n C30 H25 8OC sing 59 n n C33 H26 8OC sing 60 n n C34 H27 8OC sing 61 n n O11 H28 8OC sing 62 n n C10 C09 8OC sing 63 n n # _atom_sites.entry_id 7WCQ _atom_sites.fract_transf_matrix[1][1] 0.015948 _atom_sites.fract_transf_matrix[1][2] 0.009208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8OC A 1 101 1 8OC MOL . C 3 HOH A 1 201 39 HOH HOH . C 3 HOH A 2 202 40 HOH HOH . C 3 HOH A 3 203 34 HOH HOH . C 3 HOH A 4 204 35 HOH HOH . C 3 HOH A 5 205 18 HOH HOH . C 3 HOH A 6 206 37 HOH HOH . C 3 HOH A 7 207 21 HOH HOH . C 3 HOH A 8 208 19 HOH HOH . C 3 HOH A 9 209 3 HOH HOH . C 3 HOH A 10 210 13 HOH HOH . C 3 HOH A 11 211 31 HOH HOH . C 3 HOH A 12 212 6 HOH HOH . C 3 HOH A 13 213 16 HOH HOH . C 3 HOH A 14 214 26 HOH HOH . C 3 HOH A 15 215 2 HOH HOH . C 3 HOH A 16 216 32 HOH HOH . C 3 HOH A 17 217 5 HOH HOH . C 3 HOH A 18 218 33 HOH HOH . C 3 HOH A 19 219 11 HOH HOH . C 3 HOH A 20 220 4 HOH HOH . C 3 HOH A 21 221 24 HOH HOH . C 3 HOH A 22 222 14 HOH HOH . C 3 HOH A 23 223 22 HOH HOH . C 3 HOH A 24 224 9 HOH HOH . C 3 HOH A 25 225 8 HOH HOH . C 3 HOH A 26 226 38 HOH HOH . C 3 HOH A 27 227 12 HOH HOH . C 3 HOH A 28 228 25 HOH HOH . C 3 HOH A 29 229 29 HOH HOH . C 3 HOH A 30 230 23 HOH HOH . C 3 HOH A 31 231 27 HOH HOH . C 3 HOH A 32 232 7 HOH HOH . C 3 HOH A 33 233 17 HOH HOH . C 3 HOH A 34 234 20 HOH HOH . C 3 HOH A 35 235 28 HOH HOH . C 3 HOH A 36 236 1 HOH HOH . C 3 HOH A 37 237 15 HOH HOH . C 3 HOH A 38 238 10 HOH HOH . C 3 HOH A 39 239 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8OC . . . B 2 -9.909 -17.685 14.087 0.49 20.88 ? C10 8OC 101 A 1 HETATM 2 C C12 8OC . . . B 2 -8.858 -17.249 13.652 0.49 21.13 ? C12 8OC 101 A 1 HETATM 3 C C13 8OC . . . B 2 -7.746 -18.315 13.736 0.49 21.23 ? C13 8OC 101 A 1 HETATM 4 C C14 8OC . . . B 2 -6.502 -17.951 14.547 0.49 23.08 ? C14 8OC 101 A 1 HETATM 5 C C15 8OC . . . B 2 -6.488 -18.1 15.923 0.49 24.25 ? C15 8OC 101 A 1 HETATM 6 C C01 8OC . . . B 2 -6.224 -17.437 21.787 0.49 22.76 ? C01 8OC 101 A 1 HETATM 7 C C03 8OC . . . B 2 -8.093 -16.668 20.567 0.49 23.33 ? C03 8OC 101 A 1 HETATM 8 C C04 8OC . . . B 2 -9.458 -16.488 20.387 0.49 22.11 ? C04 8OC 101 A 1 HETATM 9 C C05 8OC . . . B 2 -9.947 -15.962 19.202 0.49 20.99 ? C05 8OC 101 A 1 HETATM 10 C C06 8OC . . . B 2 -9.069 -15.616 18.192 0.49 22.59 ? C06 8OC 101 A 1 HETATM 11 C C07 8OC . . . B 2 -9.607 -15.04 16.887 0.49 21.9 ? C07 8OC 101 A 1 HETATM 12 C C09 8OC . . . B 2 -9.988 -17.202 15.755 0.49 21.17 ? C09 8OC 101 A 1 HETATM 13 C C16 8OC . . . B 2 -5.35 -17.778 16.646 0.49 27.45 ? C16 8OC 101 A 1 HETATM 14 C C17 8OC . . . B 2 -4.227 -17.315 15.99 0.49 26.88 ? C17 8OC 101 A 1 HETATM 15 C C19 8OC . . . B 2 -4.241 -17.179 14.616 0.49 28.2 ? C19 8OC 101 A 1 HETATM 16 C C20 8OC . . . B 2 -5.369 -17.511 13.895 0.49 23.55 ? C20 8OC 101 A 1 HETATM 17 C C21 8OC . . . B 2 -8.648 -15.847 14.506 0.49 21.72 ? C21 8OC 101 A 1 HETATM 18 C C23 8OC . . . B 2 -9.152 -16.829 12.114 0.49 21.37 ? C23 8OC 101 A 1 HETATM 19 C C24 8OC . . . B 2 -8.387 -17.307 11.06 0.49 22.57 ? C24 8OC 101 A 1 HETATM 20 C C25 8OC . . . B 2 -8.685 -16.921 9.761 0.49 20.23 ? C25 8OC 101 A 1 HETATM 21 C C26 8OC . . . B 2 -9.751 -16.061 9.546 0.49 22 ? C26 8OC 101 A 1 HETATM 22 C C27 8OC . . . B 2 -10.514 -15.584 10.593 0.49 22.16 ? C27 8OC 101 A 1 HETATM 23 C C28 8OC . . . B 2 -10.21 -15.97 11.884 0.49 21.75 ? C28 8OC 101 A 1 HETATM 24 C C30 8OC . . . B 2 -9.155 -14.117 7.402 0.49 22.3 ? C30 8OC 101 A 1 HETATM 25 C C33 8OC . . . B 2 -7.705 -15.79 18.362 0.49 22.79 ? C33 8OC 101 A 1 HETATM 26 C C34 8OC . . . B 2 -7.215 -16.31 19.549 0.49 23.99 ? C34 8OC 101 A 1 HETATM 27 F F18 8OC . . . B 2 -3.104 -16.999 16.695 0.49 35.45 ? F18 8OC 101 A 1 HETATM 28 N N08 8OC . . . B 2 -9.466 -16.013 15.818 0.49 22.32 ? N08 8OC 101 A 1 HETATM 29 O O02 8OC . . . B 2 -7.608 -17.195 21.776 0.49 23.59 ? O02 8OC 101 A 1 HETATM 30 O O11 8OC . . . B 2 -9.977 -19.128 13.97 0.49 17.06 ? O11 8OC 101 A 1 HETATM 31 O O22 8OC . . . B 2 -8.039 -14.883 14.17 0.49 21.64 ? O22 8OC 101 A 1 HETATM 32 O O31 8OC . . . B 2 -11.613 -15.198 7.817 0.49 23.32 ? O31 8OC 101 A 1 HETATM 33 O O32 8OC . . . B 2 -10.139 -16.63 6.918 0.49 21.43 ? O32 8OC 101 A 1 HETATM 34 S S29 8OC . . . B 2 -10.19 -15.53 7.882 0.49 24.47 ? S29 8OC 101 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #