data_7WCV # _model_server_result.job_id ue6QLhRGdEPyq_YqgI8u1Q _model_server_result.datetime_utc '2024-12-02 12:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7WCV # _exptl.entry_id 7WCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WCV _cell.length_a 141.759 _cell.length_b 141.759 _cell.length_c 83.74 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 217 A HIS 231 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc2 A NE2 HIS 293 A HIS 307 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 39 n n C1 O2 AKG sing 40 n n C1 C2 AKG sing 41 n n O2 HO2 AKG sing 42 n n C2 O5 AKG doub 43 n n C2 C3 AKG sing 44 n n C3 C4 AKG sing 45 n n C3 H31 AKG sing 46 n n C3 H32 AKG sing 47 n n C4 C5 AKG sing 48 n n C4 H41 AKG sing 49 n n C4 H42 AKG sing 50 n n C5 O3 AKG doub 51 n n C5 O4 AKG sing 52 n n O4 HO4 AKG sing 53 n n # _atom_sites.entry_id 7WCV _atom_sites.fract_transf_matrix[1][1] 0.007054 _atom_sites.fract_transf_matrix[1][2] 0.004073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 601 1550 AKG AKG . C 3 MN A 1 602 1 MN MN . D 4 943 A 1 603 1 943 F07 . E 5 HOH A 1 701 35 HOH HOH . E 5 HOH A 2 702 29 HOH HOH . E 5 HOH A 3 703 21 HOH HOH . E 5 HOH A 4 704 17 HOH HOH . E 5 HOH A 5 705 6 HOH HOH . E 5 HOH A 6 706 10 HOH HOH . E 5 HOH A 7 707 28 HOH HOH . E 5 HOH A 8 708 9 HOH HOH . E 5 HOH A 9 709 15 HOH HOH . E 5 HOH A 10 710 4 HOH HOH . E 5 HOH A 11 711 5 HOH HOH . E 5 HOH A 12 712 13 HOH HOH . E 5 HOH A 13 713 34 HOH HOH . E 5 HOH A 14 714 11 HOH HOH . E 5 HOH A 15 715 12 HOH HOH . E 5 HOH A 16 716 23 HOH HOH . E 5 HOH A 17 717 2 HOH HOH . E 5 HOH A 18 718 22 HOH HOH . E 5 HOH A 19 719 1 HOH HOH . E 5 HOH A 20 720 7 HOH HOH . E 5 HOH A 21 721 16 HOH HOH . E 5 HOH A 22 722 24 HOH HOH . E 5 HOH A 23 723 27 HOH HOH . E 5 HOH A 24 724 37 HOH HOH . E 5 HOH A 25 725 14 HOH HOH . E 5 HOH A 26 726 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . B 2 -7.99 -30.163 -6.443 1 102.9 ? C1 AKG 601 A 1 HETATM 2 O O1 AKG . . . B 2 -7.115 -29.893 -7.294 1 103.22 ? O1 AKG 601 A 1 HETATM 3 O O2 AKG . . . B 2 -7.96 -29.676 -5.289 1 101.67 ? O2 AKG 601 A 1 HETATM 4 C C2 AKG . . . B 2 -9.057 -31.085 -6.824 1 101.07 ? C2 AKG 601 A 1 HETATM 5 O O5 AKG . . . B 2 -9.487 -31.887 -6.009 1 101.48 ? O5 AKG 601 A 1 HETATM 6 C C3 AKG . . . B 2 -9.515 -31.022 -8.072 1 95.03 ? C3 AKG 601 A 1 HETATM 7 C C4 AKG . . . B 2 -10.766 -31.633 -8.476 1 90.53 ? C4 AKG 601 A 1 HETATM 8 C C5 AKG . . . B 2 -10.544 -32.937 -9.208 1 86.77 ? C5 AKG 601 A 1 HETATM 9 O O3 AKG . . . B 2 -11.207 -33.155 -10.247 1 85.83 ? O3 AKG 601 A 1 HETATM 10 O O4 AKG . . . B 2 -9.707 -33.748 -8.753 1 82.59 ? O4 AKG 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #