data_7WD3 # _model_server_result.job_id oWa_zkcF7lyQn5IRr8oy8g _model_server_result.datetime_utc '2024-12-18 17:16:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":804}' # _entry.id 7WD3 # _exptl.entry_id 7WD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 300.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 Y N N ? 3 Z N N ? 3 BA N N ? 3 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C2' ATP . A ATP 801 1_555 H O1 NDT . A NDT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 I C2' ATP . A ATP 803 1_555 J O1 NDT . A NDT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 K C2' ATP . B ATP 801 1_555 L O1 NDT . B NDT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 M C2' ATP . B ATP 803 1_555 N O1 NDT . B NDT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 O C2' ATP . C ATP 801 1_555 P O1 NDT . C NDT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 Q C2' ATP . C ATP 803 1_555 R O1 NDT . C NDT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 S C2' ATP . D ATP 801 1_555 T O1 NDT . D NDT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 U C2' ATP . D ATP 803 1_555 V O1 NDT . E NDT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale9 W C2' ATP . E ATP 802 1_555 Y O1 NDT . F NDT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 X C2' ATP . E ATP 803 1_555 Z O1 NDT . F NDT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 AA C2' ATP . F ATP 803 1_555 BA O1 NDT . F NDT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 CA C2' ATP . F ATP 805 1_555 DA O1 NDT . F NDT 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C14 H13 B N2 O3 S' _chem_comp.formula_weight 300.141 _chem_comp.id NDT _chem_comp.mon_nstd_flag . _chem_comp.name 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 NDT doub 284 n y C1 C8 NDT sing 285 n y C1 C2 NDT sing 286 n n C4 C5 NDT sing 287 n y C4 B1 NDT sing 288 n n C5 C6 NDT doub 289 n y C5 H5 NDT sing 290 n n C6 C7 NDT sing 291 n y C6 H6 NDT sing 292 n n C7 C8 NDT doub 293 n y C7 H7 NDT sing 294 n n C8 H8 NDT sing 295 n n C2 N1 NDT doub 296 n n C2 H2 NDT sing 297 n n N1 N2 NDT sing 298 n n N2 B1 NDT sing 299 n n N2 S1 NDT sing 300 n n B1 O1 NDT sing 301 n n O1 HO1 NDT sing 302 n n S1 O2 NDT doub 303 n n S1 O3 NDT doub 304 n n S1 C15 NDT sing 305 n n C15 C16 NDT doub 306 n y C15 C20 NDT sing 307 n y C16 C17 NDT sing 308 n y C16 H16 NDT sing 309 n n C17 C18 NDT doub 310 n y C17 H17 NDT sing 311 n n C18 C19 NDT sing 312 n y C18 C21 NDT sing 313 n n C19 C20 NDT doub 314 n y C19 H19 NDT sing 315 n n C20 H20 NDT sing 316 n n C21 H211 NDT sing 317 n n C21 H212 NDT sing 318 n n C21 H213 NDT sing 319 n n # _atom_sites.entry_id 7WD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 801 801 ATP LIG . H 3 NDT A 1 802 801 NDT LIG . I 2 ATP A 1 803 802 ATP LIG . J 3 NDT A 1 804 802 NDT LIG . K 2 ATP B 1 801 801 ATP LIG . L 3 NDT B 1 802 801 NDT LIG . M 2 ATP B 1 803 802 ATP LIG . N 3 NDT B 1 804 802 NDT LIG . O 2 ATP C 1 801 801 ATP LIG . P 3 NDT C 1 802 801 NDT LIG . Q 2 ATP C 1 803 802 ATP LIG . R 3 NDT C 1 804 802 NDT LIG . S 2 ATP D 1 801 801 ATP LIG . T 3 NDT D 1 802 801 NDT LIG . U 2 ATP D 1 803 802 ATP LIG . V 3 NDT E 1 801 802 NDT LIG . W 2 ATP E 1 802 801 ATP LIG . X 2 ATP E 1 803 802 ATP LIG . Y 3 NDT F 1 801 801 NDT LIG . Z 3 NDT F 1 802 802 NDT LIG . AA 2 ATP F 1 803 801 ATP LIG . BA 3 NDT F 1 804 801 NDT LIG . CA 2 ATP F 1 805 802 ATP LIG . DA 3 NDT F 1 806 802 NDT LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDT . . . J 3 109.288 167.776 151.729 1 186.2 ? C1 NDT 804 A 1 HETATM 2 C C4 NDT . . . J 3 110.096 168.361 152.721 1 186.2 ? C4 NDT 804 A 1 HETATM 3 C C5 NDT . . . J 3 110.343 167.627 153.886 1 186.2 ? C5 NDT 804 A 1 HETATM 4 C C6 NDT . . . J 3 109.798 166.352 154.052 1 186.2 ? C6 NDT 804 A 1 HETATM 5 C C7 NDT . . . J 3 108.993 165.779 153.058 1 186.2 ? C7 NDT 804 A 1 HETATM 6 C C8 NDT . . . J 3 108.732 166.49 151.886 1 186.2 ? C8 NDT 804 A 1 HETATM 7 C C2 NDT . . . J 3 109.083 168.604 150.552 1 186.2 ? C2 NDT 804 A 1 HETATM 8 N N1 NDT . . . J 3 109.578 169.807 150.355 1 186.2 ? N1 NDT 804 A 1 HETATM 9 N N2 NDT . . . J 3 110.363 170.496 151.203 1 186.2 ? N2 NDT 804 A 1 HETATM 10 B B1 NDT . . . J 3 110.69 169.804 152.457 1 186.2 ? B1 NDT 804 A 1 HETATM 11 O O1 NDT . . . J 3 111.518 170.431 153.47 1 186.2 ? O1 NDT 804 A 1 HETATM 12 S S1 NDT . . . J 3 110.946 172.146 150.751 1 186.2 ? S1 NDT 804 A 1 HETATM 13 O O2 NDT . . . J 3 111.995 172.463 151.636 1 186.2 ? O2 NDT 804 A 1 HETATM 14 O O3 NDT . . . J 3 111.365 172.103 149.406 1 186.2 ? O3 NDT 804 A 1 HETATM 15 C C15 NDT . . . J 3 109.673 173.47 150.916 1 186.2 ? C15 NDT 804 A 1 HETATM 16 C C16 NDT . . . J 3 109.257 174.01 152.157 1 186.2 ? C16 NDT 804 A 1 HETATM 17 C C17 NDT . . . J 3 108.286 175.02 152.293 1 186.2 ? C17 NDT 804 A 1 HETATM 18 C C18 NDT . . . J 3 107.629 175.595 151.188 1 186.2 ? C18 NDT 804 A 1 HETATM 19 C C19 NDT . . . J 3 108.026 175.073 149.943 1 186.2 ? C19 NDT 804 A 1 HETATM 20 C C20 NDT . . . J 3 109 174.062 149.823 1 186.2 ? C20 NDT 804 A 1 HETATM 21 C C21 NDT . . . J 3 106.591 176.674 151.335 1 186.2 ? C21 NDT 804 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #