data_7WDB # _model_server_result.job_id 4eJ6VdJOgxNe6JoqJx-OLg _model_server_result.datetime_utc '2024-10-31 12:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 7WDB # _exptl.entry_id 7WDB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 S N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 7WDB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 901 POV POV . F 3 Y01 A 1 902 1001 Y01 Y01 . G 4 ZN A 1 903 1101 ZN ZN . H 5 CA A 1 904 1201 CA CA . I 6 657 A 1 905 1401 657 LIG . J 7 PTY A 1 906 1501 PTY PTY . K 8 7OC A 1 907 1601 7OC DAX . L 2 POV B 1 901 901 POV POV . M 3 Y01 B 1 902 1001 Y01 Y01 . N 4 ZN B 1 903 1101 ZN ZN . O 5 CA B 1 904 1201 CA CA . P 6 657 B 1 905 1401 657 LIG . Q 7 PTY B 1 906 1501 PTY PTY . R 8 7OC B 1 907 1601 7OC DAX . S 2 POV C 1 901 901 POV POV . T 3 Y01 C 1 902 1001 Y01 Y01 . U 4 ZN C 1 903 1101 ZN ZN . V 5 CA C 1 904 1201 CA CA . W 6 657 C 1 905 1401 657 LIG . X 7 PTY C 1 906 1501 PTY PTY . Y 8 7OC C 1 907 1601 7OC DAX . Z 2 POV D 1 901 901 POV POV . AA 3 Y01 D 1 902 1001 Y01 Y01 . BA 4 ZN D 1 903 1101 ZN ZN . CA 5 CA D 1 904 1201 CA CA . DA 6 657 D 1 905 1401 657 LIG . EA 7 PTY D 1 906 1501 PTY PTY . FA 8 7OC D 1 907 1601 7OC DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . E 2 143.931 184.758 185.682 1 146.66 ? P POV 901 A 1 HETATM 2 C C1 POV . . . E 2 144.094 183.909 183.187 1 122.2 ? C1 POV 901 A 1 HETATM 3 C C2 POV . . . E 2 144.934 184.064 181.918 1 114.28 ? C2 POV 901 A 1 HETATM 4 C C3 POV . . . E 2 144.661 182.87 181.018 1 104.48 ? C3 POV 901 A 1 HETATM 5 C C210 POV . . . E 2 149.259 184.309 173.605 1 74.46 ? C210 POV 901 A 1 HETATM 6 C C310 POV . . . E 2 149.556 176.434 170.167 1 67.19 ? C310 POV 901 A 1 HETATM 7 O O11 POV . . . E 2 144.771 184.327 184.377 1 126.71 ? O11 POV 901 A 1 HETATM 8 C C211 POV . . . E 2 150.013 183.548 172.546 1 73.16 ? C211 POV 901 A 1 HETATM 9 C C311 POV . . . E 2 149.511 177.562 169.146 1 61.92 ? C311 POV 901 A 1 HETATM 10 O O12 POV . . . E 2 143.903 183.386 186.524 1 130.16 ? O12 POV 901 A 1 HETATM 11 C C212 POV . . . E 2 149.097 182.483 171.972 1 77.62 ? C212 POV 901 A 1 HETATM 12 O O13 POV . . . E 2 144.731 185.764 186.47 1 131.25 ? O13 POV 901 A 1 HETATM 13 C C213 POV . . . E 2 149.895 181.519 171.117 1 79.36 ? C213 POV 901 A 1 HETATM 14 O O14 POV . . . E 2 142.517 185.079 185.253 1 142.08 ? O14 POV 901 A 1 HETATM 15 C C214 POV . . . E 2 150.58 182.25 169.975 1 69.22 ? C214 POV 901 A 1 HETATM 16 C C215 POV . . . E 2 149.614 182.448 168.825 1 67.36 ? C215 POV 901 A 1 HETATM 17 C C216 POV . . . E 2 150.305 182.154 167.502 1 68.63 ? C216 POV 901 A 1 HETATM 18 C C217 POV . . . E 2 150.341 180.655 167.221 1 73.19 ? C217 POV 901 A 1 HETATM 19 C C218 POV . . . E 2 150.699 180.379 165.779 1 63.29 ? C218 POV 901 A 1 HETATM 20 C C21 POV . . . E 2 146.786 185.436 182.563 1 115.59 ? C21 POV 901 A 1 HETATM 21 O O21 POV . . . E 2 146.314 184.103 182.26 1 116.65 ? O21 POV 901 A 1 HETATM 22 C C22 POV . . . E 2 148.272 185.639 182.76 1 104.58 ? C22 POV 901 A 1 HETATM 23 O O22 POV . . . E 2 146.006 186.369 182.65 1 118.77 ? O22 POV 901 A 1 HETATM 24 C C23 POV . . . E 2 149.023 185.317 181.472 1 96.92 ? C23 POV 901 A 1 HETATM 25 C C24 POV . . . E 2 148.197 185.67 180.244 1 95.76 ? C24 POV 901 A 1 HETATM 26 C C25 POV . . . E 2 148.691 184.941 179.001 1 90.96 ? C25 POV 901 A 1 HETATM 27 C C26 POV . . . E 2 147.515 184.559 178.114 1 89.06 ? C26 POV 901 A 1 HETATM 28 C C27 POV . . . E 2 147.972 183.848 176.849 1 81.15 ? C27 POV 901 A 1 HETATM 29 C C28 POV . . . E 2 148.699 184.81 175.928 1 79.48 ? C28 POV 901 A 1 HETATM 30 C C29 POV . . . E 2 149.459 184.032 174.885 1 76.79 ? C29 POV 901 A 1 HETATM 31 C C31 POV . . . E 2 145.55 181.831 178.966 1 97.17 ? C31 POV 901 A 1 HETATM 32 O O31 POV . . . E 2 145.74 182.709 180.109 1 99.88 ? O31 POV 901 A 1 HETATM 33 C C32 POV . . . E 2 146.669 181.578 177.986 1 92 ? C32 POV 901 A 1 HETATM 34 O O32 POV . . . E 2 144.461 181.309 178.814 1 96.23 ? O32 POV 901 A 1 HETATM 35 C C33 POV . . . E 2 146.185 180.695 176.842 1 85.14 ? C33 POV 901 A 1 HETATM 36 C C34 POV . . . E 2 147.351 180.23 175.976 1 76.37 ? C34 POV 901 A 1 HETATM 37 C C35 POV . . . E 2 146.823 179.507 174.746 1 78.49 ? C35 POV 901 A 1 HETATM 38 C C36 POV . . . E 2 147.935 179.084 173.798 1 78.63 ? C36 POV 901 A 1 HETATM 39 C C37 POV . . . E 2 147.394 178.092 172.78 1 79.07 ? C37 POV 901 A 1 HETATM 40 C C38 POV . . . E 2 148.223 178.043 171.506 1 73.22 ? C38 POV 901 A 1 HETATM 41 C C39 POV . . . E 2 149.272 176.949 171.566 1 68.53 ? C39 POV 901 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #