data_7WDB # _model_server_result.job_id u7-HIeteSm4A2FNbcXUlpw _model_server_result.datetime_utc '2024-10-31 12:18:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":902}' # _entry.id 7WDB # _exptl.entry_id 7WDB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 M N N ? 3 T N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WDB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 901 POV POV . F 3 Y01 A 1 902 1001 Y01 Y01 . G 4 ZN A 1 903 1101 ZN ZN . H 5 CA A 1 904 1201 CA CA . I 6 657 A 1 905 1401 657 LIG . J 7 PTY A 1 906 1501 PTY PTY . K 8 7OC A 1 907 1601 7OC DAX . L 2 POV B 1 901 901 POV POV . M 3 Y01 B 1 902 1001 Y01 Y01 . N 4 ZN B 1 903 1101 ZN ZN . O 5 CA B 1 904 1201 CA CA . P 6 657 B 1 905 1401 657 LIG . Q 7 PTY B 1 906 1501 PTY PTY . R 8 7OC B 1 907 1601 7OC DAX . S 2 POV C 1 901 901 POV POV . T 3 Y01 C 1 902 1001 Y01 Y01 . U 4 ZN C 1 903 1101 ZN ZN . V 5 CA C 1 904 1201 CA CA . W 6 657 C 1 905 1401 657 LIG . X 7 PTY C 1 906 1501 PTY PTY . Y 8 7OC C 1 907 1601 7OC DAX . Z 2 POV D 1 901 901 POV POV . AA 3 Y01 D 1 902 1001 Y01 Y01 . BA 4 ZN D 1 903 1101 ZN ZN . CA 5 CA D 1 904 1201 CA CA . DA 6 657 D 1 905 1401 657 LIG . EA 7 PTY D 1 906 1501 PTY PTY . FA 8 7OC D 1 907 1601 7OC DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . T 3 133.928 169.147 162.475 1 70.37 ? CAA Y01 902 C 1 HETATM 2 C CBA Y01 . . . T 3 133.304 167.926 161.811 1 70.15 ? CBA Y01 902 C 1 HETATM 3 C CAB Y01 . . . T 3 133.615 167.894 160.319 1 71.06 ? CAB Y01 902 C 1 HETATM 4 C CAN Y01 . . . T 3 131.8 167.883 162.057 1 68.7 ? CAN Y01 902 C 1 HETATM 5 C CAJ Y01 . . . T 3 131.127 169.184 161.631 1 71.63 ? CAJ Y01 902 C 1 HETATM 6 C CAO Y01 . . . T 3 129.662 168.918 161.3 1 70.23 ? CAO Y01 902 C 1 HETATM 7 C CBB Y01 . . . T 3 129.122 169.884 160.247 1 68.19 ? CBB Y01 902 C 1 HETATM 8 C CAC Y01 . . . T 3 129.365 171.314 160.724 1 68.66 ? CAC Y01 902 C 1 HETATM 9 C CBE Y01 . . . T 3 129.701 169.614 158.852 1 64.86 ? CBE Y01 902 C 1 HETATM 10 C CAP Y01 . . . T 3 129.933 168.12 158.591 1 67.7 ? CAP Y01 902 C 1 HETATM 11 C CAQ Y01 . . . T 3 129.622 167.842 157.12 1 64.97 ? CAQ Y01 902 C 1 HETATM 12 C CBG Y01 . . . T 3 129.396 169.229 156.551 1 64.54 ? CBG Y01 902 C 1 HETATM 13 C CBI Y01 . . . T 3 128.809 170.032 157.69 1 64.91 ? CBI Y01 902 C 1 HETATM 14 C CAE Y01 . . . T 3 127.382 169.574 157.98 1 64.39 ? CAE Y01 902 C 1 HETATM 15 C CAU Y01 . . . T 3 128.818 171.496 157.276 1 65.65 ? CAU Y01 902 C 1 HETATM 16 C CAS Y01 . . . T 3 128.003 171.663 155.992 1 67.35 ? CAS Y01 902 C 1 HETATM 17 C CBF Y01 . . . T 3 128.524 170.774 154.858 1 65.78 ? CBF Y01 902 C 1 HETATM 18 C CBD Y01 . . . T 3 128.571 169.314 155.284 1 63.21 ? CBD Y01 902 C 1 HETATM 19 C CAK Y01 . . . T 3 129.228 168.473 154.209 1 60.03 ? CAK Y01 902 C 1 HETATM 20 C CAI Y01 . . . T 3 128.538 168.734 152.896 1 62.05 ? CAI Y01 902 C 1 HETATM 21 C CAZ Y01 . . . T 3 128.092 169.951 152.544 1 65.09 ? CAZ Y01 902 C 1 HETATM 22 C CAV Y01 . . . T 3 127.927 170.242 151.069 1 60.37 ? CAV Y01 902 C 1 HETATM 23 C CBH Y01 . . . T 3 127.698 170.966 153.594 1 66.4 ? CBH Y01 902 C 1 HETATM 24 C CAD Y01 . . . T 3 126.223 170.753 153.895 1 63.74 ? CAD Y01 902 C 1 HETATM 25 C CAT Y01 . . . T 3 127.92 172.39 153.101 1 67.85 ? CAT Y01 902 C 1 HETATM 26 C CAR Y01 . . . T 3 127.312 172.575 151.724 1 66.53 ? CAR Y01 902 C 1 HETATM 27 C CBC Y01 . . . T 3 128.101 171.722 150.744 1 62.87 ? CBC Y01 902 C 1 HETATM 28 O OAW Y01 . . . T 3 127.63 171.97 149.422 1 64.03 ? OAW Y01 902 C 1 HETATM 29 C CAY Y01 . . . T 3 128.701 172.399 148.536 1 69.31 ? CAY Y01 902 C 1 HETATM 30 O OAG Y01 . . . T 3 129.728 171.741 148.477 1 69.92 ? OAG Y01 902 C 1 HETATM 31 C CAM Y01 . . . T 3 128.53 173.634 147.682 1 71.51 ? CAM Y01 902 C 1 HETATM 32 C CAL Y01 . . . T 3 128.159 173.22 146.263 1 66.43 ? CAL Y01 902 C 1 HETATM 33 C CAX Y01 . . . T 3 126.716 172.769 146.223 1 69.57 ? CAX Y01 902 C 1 HETATM 34 O OAH Y01 . . . T 3 125.846 173.384 145.426 1 64.29 ? OAH Y01 902 C 1 HETATM 35 O OAF Y01 . . . T 3 126.326 171.839 146.914 1 74.13 ? OAF Y01 902 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #