data_7WDB # _model_server_result.job_id gAGTmdNNza0nxJYDIabBjg _model_server_result.datetime_utc '2024-10-31 12:15:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":906}' # _entry.id 7WDB # _exptl.entry_id 7WDB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 Q N N ? 7 X N N ? 7 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WDB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 901 POV POV . F 3 Y01 A 1 902 1001 Y01 Y01 . G 4 ZN A 1 903 1101 ZN ZN . H 5 CA A 1 904 1201 CA CA . I 6 657 A 1 905 1401 657 LIG . J 7 PTY A 1 906 1501 PTY PTY . K 8 7OC A 1 907 1601 7OC DAX . L 2 POV B 1 901 901 POV POV . M 3 Y01 B 1 902 1001 Y01 Y01 . N 4 ZN B 1 903 1101 ZN ZN . O 5 CA B 1 904 1201 CA CA . P 6 657 B 1 905 1401 657 LIG . Q 7 PTY B 1 906 1501 PTY PTY . R 8 7OC B 1 907 1601 7OC DAX . S 2 POV C 1 901 901 POV POV . T 3 Y01 C 1 902 1001 Y01 Y01 . U 4 ZN C 1 903 1101 ZN ZN . V 5 CA C 1 904 1201 CA CA . W 6 657 C 1 905 1401 657 LIG . X 7 PTY C 1 906 1501 PTY PTY . Y 8 7OC C 1 907 1601 7OC DAX . Z 2 POV D 1 901 901 POV POV . AA 3 Y01 D 1 902 1001 Y01 Y01 . BA 4 ZN D 1 903 1101 ZN ZN . CA 5 CA D 1 904 1201 CA CA . DA 6 657 D 1 905 1401 657 LIG . EA 7 PTY D 1 906 1501 PTY PTY . FA 8 7OC D 1 907 1601 7OC DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . J 7 154.374 170.504 152.735 1 86.42 ? C1 PTY 906 A 1 HETATM 2 C C2 PTY . . . J 7 152.429 173.451 146.233 1 103.39 ? C2 PTY 906 A 1 HETATM 3 C C3 PTY . . . J 7 153.385 172.444 146.856 1 113.94 ? C3 PTY 906 A 1 HETATM 4 O O4 PTY . . . J 7 154.695 171.882 152.603 1 84.96 ? O4 PTY 906 A 1 HETATM 5 C C5 PTY . . . J 7 154.904 169.686 150.344 1 92.51 ? C5 PTY 906 A 1 HETATM 6 C C6 PTY . . . J 7 155.134 169.538 151.845 1 85.95 ? C6 PTY 906 A 1 HETATM 7 O O7 PTY . . . J 7 154.525 168.335 152.266 1 78.36 ? O7 PTY 906 A 1 HETATM 8 C C8 PTY . . . J 7 155.323 167.597 153.227 1 72.98 ? C8 PTY 906 A 1 HETATM 9 O O10 PTY . . . J 7 155.674 166.487 152.865 1 70.16 ? O10 PTY 906 A 1 HETATM 10 C C11 PTY . . . J 7 155.704 168.152 154.597 1 71.75 ? C11 PTY 906 A 1 HETATM 11 C C12 PTY . . . J 7 154.52 168.601 155.46 1 66.4 ? C12 PTY 906 A 1 HETATM 12 C C13 PTY . . . J 7 154.955 168.713 156.922 1 66.32 ? C13 PTY 906 A 1 HETATM 13 C C14 PTY . . . J 7 154.065 169.634 157.755 1 67.87 ? C14 PTY 906 A 1 HETATM 14 C C15 PTY . . . J 7 154.249 169.381 159.247 1 62.99 ? C15 PTY 906 A 1 HETATM 15 C C16 PTY . . . J 7 153.192 170.108 160.075 1 60.84 ? C16 PTY 906 A 1 HETATM 16 C C17 PTY . . . J 7 152.87 169.281 161.312 1 58.34 ? C17 PTY 906 A 1 HETATM 17 C C18 PTY . . . J 7 152.381 170.136 162.472 1 52.88 ? C18 PTY 906 A 1 HETATM 18 C C19 PTY . . . J 7 152.7 169.439 163.793 1 46.68 ? C19 PTY 906 A 1 HETATM 19 C C20 PTY . . . J 7 152.112 170.189 164.983 1 51.71 ? C20 PTY 906 A 1 HETATM 20 C C21 PTY . . . J 7 153.056 170.126 166.177 1 45.06 ? C21 PTY 906 A 1 HETATM 21 C C22 PTY . . . J 7 152.453 170.783 167.417 1 44.36 ? C22 PTY 906 A 1 HETATM 22 C C23 PTY . . . J 7 152.38 169.761 168.546 1 42.8 ? C23 PTY 906 A 1 HETATM 23 C C24 PTY . . . J 7 151.919 170.393 169.854 1 41.99 ? C24 PTY 906 A 1 HETATM 24 C C25 PTY . . . J 7 150.57 171.087 169.7 1 44.2 ? C25 PTY 906 A 1 HETATM 25 C C26 PTY . . . J 7 150.081 171.571 171.063 1 47.3 ? C26 PTY 906 A 1 HETATM 26 C C27 PTY . . . J 7 148.859 172.478 170.939 1 51.98 ? C27 PTY 906 A 1 HETATM 27 C C28 PTY . . . J 7 148.387 172.938 172.315 1 47.53 ? C28 PTY 906 A 1 HETATM 28 C C29 PTY . . . J 7 147.153 173.815 172.255 1 57.29 ? C29 PTY 906 A 1 HETATM 29 C C30 PTY . . . J 7 153.706 172.829 153.115 1 86.26 ? C30 PTY 906 A 1 HETATM 30 C C31 PTY . . . J 7 153.953 173.522 154.442 1 78 ? C31 PTY 906 A 1 HETATM 31 O O30 PTY . . . J 7 152.703 173.043 152.427 1 110.71 ? O30 PTY 906 A 1 HETATM 32 C C32 PTY . . . J 7 154.04 172.512 155.573 1 74.19 ? C32 PTY 906 A 1 HETATM 33 C C33 PTY . . . J 7 153.45 173.161 156.814 1 70.05 ? C33 PTY 906 A 1 HETATM 34 C C34 PTY . . . J 7 152.119 173.822 156.485 1 72.64 ? C34 PTY 906 A 1 HETATM 35 C C35 PTY . . . J 7 151.23 173.78 157.713 1 68.54 ? C35 PTY 906 A 1 HETATM 36 C C36 PTY . . . J 7 151.958 174.449 158.872 1 63.72 ? C36 PTY 906 A 1 HETATM 37 C C37 PTY . . . J 7 151.998 173.502 160.063 1 63.59 ? C37 PTY 906 A 1 HETATM 38 C C38 PTY . . . J 7 151.892 174.271 161.371 1 63.17 ? C38 PTY 906 A 1 HETATM 39 C C39 PTY . . . J 7 150.592 175.065 161.421 1 63.1 ? C39 PTY 906 A 1 HETATM 40 C C40 PTY . . . J 7 150.402 175.674 162.802 1 61.98 ? C40 PTY 906 A 1 HETATM 41 C C41 PTY . . . J 7 150.631 174.626 163.882 1 55.74 ? C41 PTY 906 A 1 HETATM 42 C C42 PTY . . . J 7 150.6 175.28 165.253 1 58.21 ? C42 PTY 906 A 1 HETATM 43 C C43 PTY . . . J 7 150.87 174.224 166.309 1 56.27 ? C43 PTY 906 A 1 HETATM 44 C C44 PTY . . . J 7 149.912 174.378 167.468 1 58.8 ? C44 PTY 906 A 1 HETATM 45 P P1 PTY . . . J 7 154.488 172.021 149.17 1 173.4 ? P1 PTY 906 A 1 HETATM 46 O O11 PTY . . . J 7 153.208 172.357 148.261 1 121.81 ? O11 PTY 906 A 1 HETATM 47 O O12 PTY . . . J 7 154.526 173.332 149.917 1 117.49 ? O12 PTY 906 A 1 HETATM 48 O O13 PTY . . . J 7 155.754 171.767 148.368 1 123.82 ? O13 PTY 906 A 1 HETATM 49 O O14 PTY . . . J 7 153.992 170.741 150.058 1 105.46 ? O14 PTY 906 A 1 HETATM 50 N N1 PTY . . . J 7 151.195 173.696 146.961 1 104.15 ? N1 PTY 906 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #