data_7WDB # _model_server_result.job_id 4agbIGqDIiOEwtajjTRy0w _model_server_result.datetime_utc '2024-10-31 12:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":907}' # _entry.id 7WDB # _exptl.entry_id 7WDB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 620.986 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-[(~{E})-octadec-10-enoyl]oxy-2-oxidanyl-propyl] (~{E})-octadec-10-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 R N N ? 8 Y N N ? 8 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C39 H72 O5' _chem_comp.formula_weight 620.986 _chem_comp.id 7OC _chem_comp.mon_nstd_flag . _chem_comp.name '[3-[(~{E})-octadec-10-enoyl]oxy-2-oxidanyl-propyl] (~{E})-octadec-10-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WDB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 901 POV POV . F 3 Y01 A 1 902 1001 Y01 Y01 . G 4 ZN A 1 903 1101 ZN ZN . H 5 CA A 1 904 1201 CA CA . I 6 657 A 1 905 1401 657 LIG . J 7 PTY A 1 906 1501 PTY PTY . K 8 7OC A 1 907 1601 7OC DAX . L 2 POV B 1 901 901 POV POV . M 3 Y01 B 1 902 1001 Y01 Y01 . N 4 ZN B 1 903 1101 ZN ZN . O 5 CA B 1 904 1201 CA CA . P 6 657 B 1 905 1401 657 LIG . Q 7 PTY B 1 906 1501 PTY PTY . R 8 7OC B 1 907 1601 7OC DAX . S 2 POV C 1 901 901 POV POV . T 3 Y01 C 1 902 1001 Y01 Y01 . U 4 ZN C 1 903 1101 ZN ZN . V 5 CA C 1 904 1201 CA CA . W 6 657 C 1 905 1401 657 LIG . X 7 PTY C 1 906 1501 PTY PTY . Y 8 7OC C 1 907 1601 7OC DAX . Z 2 POV D 1 901 901 POV POV . AA 3 Y01 D 1 902 1001 Y01 Y01 . BA 4 ZN D 1 903 1101 ZN ZN . CA 5 CA D 1 904 1201 CA CA . DA 6 657 D 1 905 1401 657 LIG . EA 7 PTY D 1 906 1501 PTY PTY . FA 8 7OC D 1 907 1601 7OC DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7OC . . . K 8 145.459 165.675 174.334 1 20 ? C1 7OC 907 A 1 HETATM 2 C C2 7OC . . . K 8 144.922 165.811 172.931 1 20 ? C2 7OC 907 A 1 HETATM 3 C C3 7OC . . . K 8 145.025 164.47 172.246 1 20 ? C3 7OC 907 A 1 HETATM 4 C C11 7OC . . . K 8 145.41 165.132 169.917 1 20 ? C11 7OC 907 A 1 HETATM 5 C C12 7OC . . . K 8 144.93 165.441 168.536 1 20 ? C12 7OC 907 A 1 HETATM 6 C C13 7OC . . . K 8 146.137 165.585 167.628 1 20 ? C13 7OC 907 A 1 HETATM 7 C C14 7OC . . . K 8 145.732 165.59 166.164 1 20 ? C14 7OC 907 A 1 HETATM 8 C C15 7OC . . . K 8 146.948 165.846 165.297 1 20 ? C15 7OC 907 A 1 HETATM 9 C C16 7OC . . . K 8 146.655 165.776 163.81 1 20 ? C16 7OC 907 A 1 HETATM 10 C C17 7OC . . . K 8 147.924 166.104 163.032 1 20 ? C17 7OC 907 A 1 HETATM 11 C C18 7OC . . . K 8 147.876 165.657 161.575 1 20 ? C18 7OC 907 A 1 HETATM 12 C C19 7OC . . . K 8 149.126 166.168 160.897 1 20 ? C19 7OC 907 A 1 HETATM 13 C C20 7OC . . . K 8 149.652 165.587 159.824 1 20 ? C20 7OC 907 A 1 HETATM 14 C C21 7OC . . . K 8 150.904 166.183 159.225 1 20 ? C21 7OC 907 A 1 HETATM 15 C C22 7OC . . . K 8 151.785 165.083 158.651 1 20 ? C22 7OC 907 A 1 HETATM 16 C C23 7OC . . . K 8 153.229 165.528 158.491 1 20 ? C23 7OC 907 A 1 HETATM 17 C C24 7OC . . . K 8 154.13 164.369 158.086 1 20 ? C24 7OC 907 A 1 HETATM 18 C C31 7OC . . . K 8 143.151 167.232 172.172 1 20 ? C31 7OC 907 A 1 HETATM 19 C C32 7OC . . . K 8 141.767 167.795 172.301 1 20 ? C32 7OC 907 A 1 HETATM 20 C C33 7OC . . . K 8 140.973 167.437 171.063 1 20 ? C33 7OC 907 A 1 HETATM 21 C C34 7OC . . . K 8 140.726 165.95 170.951 1 20 ? C34 7OC 907 A 1 HETATM 22 C C35 7OC . . . K 8 140.109 165.661 169.599 1 20 ? C35 7OC 907 A 1 HETATM 23 C C36 7OC . . . K 8 141.167 165.17 168.636 1 20 ? C36 7OC 907 A 1 HETATM 24 C C37 7OC . . . K 8 140.715 165.316 167.2 1 20 ? C37 7OC 907 A 1 HETATM 25 C C38 7OC . . . K 8 141.267 164.171 166.378 1 20 ? C38 7OC 907 A 1 HETATM 26 C C39 7OC . . . K 8 141.75 164.66 165.042 1 20 ? C39 7OC 907 A 1 HETATM 27 C C40 7OC . . . K 8 142.374 163.811 164.236 1 20 ? C40 7OC 907 A 1 HETATM 28 C C41 7OC . . . K 8 142.576 162.39 164.683 1 20 ? C41 7OC 907 A 1 HETATM 29 C C42 7OC . . . K 8 142.952 161.538 163.488 1 20 ? C42 7OC 907 A 1 HETATM 30 C C43 7OC . . . K 8 142.904 160.061 163.833 1 20 ? C43 7OC 907 A 1 HETATM 31 C C44 7OC . . . K 8 142.875 159.239 162.557 1 20 ? C44 7OC 907 A 1 HETATM 32 C C45 7OC . . . K 8 142.042 157.977 162.709 1 20 ? C45 7OC 907 A 1 HETATM 33 O O11 7OC . . . K 8 146.547 165.327 170.222 1 20 ? O11 7OC 907 A 1 HETATM 34 O O2 7OC . . . K 8 143.559 166.15 173.026 1 20 ? O2 7OC 907 A 1 HETATM 35 O O3 7OC . . . K 8 144.549 164.585 170.923 1 20 ? O3 7OC 907 A 1 HETATM 36 O O31 7OC . . . K 8 143.919 167.673 171.355 1 20 ? O31 7OC 907 A 1 HETATM 37 O O3P 7OC . . . K 8 144.703 164.67 174.984 1 20 ? O3P 7OC 907 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 132 _model_server_stats.query_time_ms 572 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #