data_7WDB # _model_server_result.job_id u3s68x7RKwH3IInnoE4vkA _model_server_result.datetime_utc '2024-10-31 12:13:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":907}' # _entry.id 7WDB # _exptl.entry_id 7WDB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 620.986 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-[(~{E})-octadec-10-enoyl]oxy-2-oxidanyl-propyl] (~{E})-octadec-10-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 R N N ? 8 Y N N ? 8 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 U ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 V CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 BA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 CA CA CA . D CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C39 H72 O5' _chem_comp.formula_weight 620.986 _chem_comp.id 7OC _chem_comp.mon_nstd_flag . _chem_comp.name '[3-[(~{E})-octadec-10-enoyl]oxy-2-oxidanyl-propyl] (~{E})-octadec-10-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WDB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 901 901 POV POV . F 3 Y01 A 1 902 1001 Y01 Y01 . G 4 ZN A 1 903 1101 ZN ZN . H 5 CA A 1 904 1201 CA CA . I 6 657 A 1 905 1401 657 LIG . J 7 PTY A 1 906 1501 PTY PTY . K 8 7OC A 1 907 1601 7OC DAX . L 2 POV B 1 901 901 POV POV . M 3 Y01 B 1 902 1001 Y01 Y01 . N 4 ZN B 1 903 1101 ZN ZN . O 5 CA B 1 904 1201 CA CA . P 6 657 B 1 905 1401 657 LIG . Q 7 PTY B 1 906 1501 PTY PTY . R 8 7OC B 1 907 1601 7OC DAX . S 2 POV C 1 901 901 POV POV . T 3 Y01 C 1 902 1001 Y01 Y01 . U 4 ZN C 1 903 1101 ZN ZN . V 5 CA C 1 904 1201 CA CA . W 6 657 C 1 905 1401 657 LIG . X 7 PTY C 1 906 1501 PTY PTY . Y 8 7OC C 1 907 1601 7OC DAX . Z 2 POV D 1 901 901 POV POV . AA 3 Y01 D 1 902 1001 Y01 Y01 . BA 4 ZN D 1 903 1101 ZN ZN . CA 5 CA D 1 904 1201 CA CA . DA 6 657 D 1 905 1401 657 LIG . EA 7 PTY D 1 906 1501 PTY PTY . FA 8 7OC D 1 907 1601 7OC DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7OC . . . Y 8 129.885 145.464 174.335 1 20 ? C1 7OC 907 C 1 HETATM 2 C C2 7OC . . . Y 8 129.749 144.927 172.932 1 20 ? C2 7OC 907 C 1 HETATM 3 C C3 7OC . . . Y 8 131.09 145.029 172.247 1 20 ? C3 7OC 907 C 1 HETATM 4 C C11 7OC . . . Y 8 130.429 145.414 169.918 1 20 ? C11 7OC 907 C 1 HETATM 5 C C12 7OC . . . Y 8 130.12 144.934 168.537 1 20 ? C12 7OC 907 C 1 HETATM 6 C C13 7OC . . . Y 8 129.976 146.141 167.629 1 20 ? C13 7OC 907 C 1 HETATM 7 C C14 7OC . . . Y 8 129.971 145.736 166.165 1 20 ? C14 7OC 907 C 1 HETATM 8 C C15 7OC . . . Y 8 129.715 146.951 165.298 1 20 ? C15 7OC 907 C 1 HETATM 9 C C16 7OC . . . Y 8 129.785 146.658 163.811 1 20 ? C16 7OC 907 C 1 HETATM 10 C C17 7OC . . . Y 8 129.457 147.927 163.033 1 20 ? C17 7OC 907 C 1 HETATM 11 C C18 7OC . . . Y 8 129.904 147.879 161.576 1 20 ? C18 7OC 907 C 1 HETATM 12 C C19 7OC . . . Y 8 129.392 149.129 160.898 1 20 ? C19 7OC 907 C 1 HETATM 13 C C20 7OC . . . Y 8 129.973 149.655 159.825 1 20 ? C20 7OC 907 C 1 HETATM 14 C C21 7OC . . . Y 8 129.377 150.907 159.225 1 20 ? C21 7OC 907 C 1 HETATM 15 C C22 7OC . . . Y 8 130.477 151.788 158.65 1 20 ? C22 7OC 907 C 1 HETATM 16 C C23 7OC . . . Y 8 130.032 153.232 158.49 1 20 ? C23 7OC 907 C 1 HETATM 17 C C24 7OC . . . Y 8 131.191 154.133 158.085 1 20 ? C24 7OC 907 C 1 HETATM 18 C C31 7OC . . . Y 8 128.329 143.156 172.173 1 20 ? C31 7OC 907 C 1 HETATM 19 C C32 7OC . . . Y 8 127.766 141.772 172.302 1 20 ? C32 7OC 907 C 1 HETATM 20 C C33 7OC . . . Y 8 128.124 140.978 171.064 1 20 ? C33 7OC 907 C 1 HETATM 21 C C34 7OC . . . Y 8 129.61 140.731 170.952 1 20 ? C34 7OC 907 C 1 HETATM 22 C C35 7OC . . . Y 8 129.899 140.113 169.6 1 20 ? C35 7OC 907 C 1 HETATM 23 C C36 7OC . . . Y 8 130.39 141.171 168.637 1 20 ? C36 7OC 907 C 1 HETATM 24 C C37 7OC . . . Y 8 130.244 140.719 167.201 1 20 ? C37 7OC 907 C 1 HETATM 25 C C38 7OC . . . Y 8 131.389 141.271 166.379 1 20 ? C38 7OC 907 C 1 HETATM 26 C C39 7OC . . . Y 8 130.9 141.754 165.043 1 20 ? C39 7OC 907 C 1 HETATM 27 C C40 7OC . . . Y 8 131.749 142.378 164.237 1 20 ? C40 7OC 907 C 1 HETATM 28 C C41 7OC . . . Y 8 133.17 142.58 164.684 1 20 ? C41 7OC 907 C 1 HETATM 29 C C42 7OC . . . Y 8 134.022 142.956 163.489 1 20 ? C42 7OC 907 C 1 HETATM 30 C C43 7OC . . . Y 8 135.499 142.907 163.834 1 20 ? C43 7OC 907 C 1 HETATM 31 C C44 7OC . . . Y 8 136.321 142.878 162.558 1 20 ? C44 7OC 907 C 1 HETATM 32 C C45 7OC . . . Y 8 137.583 142.045 162.71 1 20 ? C45 7OC 907 C 1 HETATM 33 O O11 7OC . . . Y 8 130.233 146.551 170.223 1 20 ? O11 7OC 907 C 1 HETATM 34 O O2 7OC . . . Y 8 129.411 143.564 173.027 1 20 ? O2 7OC 907 C 1 HETATM 35 O O3 7OC . . . Y 8 130.976 144.553 170.924 1 20 ? O3 7OC 907 C 1 HETATM 36 O O31 7OC . . . Y 8 127.888 143.924 171.356 1 20 ? O31 7OC 907 C 1 HETATM 37 O O3P 7OC . . . Y 8 130.89 144.708 174.985 1 20 ? O3P 7OC 907 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 37 #