data_7WDN # _model_server_result.job_id RD6rUbY-MwpTSQQ6BUfGrA _model_server_result.datetime_utc '2024-11-14 04:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7WDN # _exptl.entry_id 7WDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDN _cell.length_a 202.488 _cell.length_b 202.488 _cell.length_c 202.488 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 83 n n C1 O1 GLC sing 84 n n C1 O5 GLC sing 85 n n C1 H1 GLC sing 86 n n C2 C3 GLC sing 87 n n C2 O2 GLC sing 88 n n C2 H2 GLC sing 89 n n C3 C4 GLC sing 90 n n C3 O3 GLC sing 91 n n C3 H3 GLC sing 92 n n C4 C5 GLC sing 93 n n C4 O4 GLC sing 94 n n C4 H4 GLC sing 95 n n C5 C6 GLC sing 96 n n C5 O5 GLC sing 97 n n C5 H5 GLC sing 98 n n C6 O6 GLC sing 99 n n C6 H61 GLC sing 100 n n C6 H62 GLC sing 101 n n O1 HO1 GLC sing 102 n n O2 HO2 GLC sing 103 n n O3 HO3 GLC sing 104 n n O4 HO4 GLC sing 105 n n O6 HO6 GLC sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7WDN _atom_sites.fract_transf_matrix[1][1] 0.004939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 501 501 GLC GLC . C 2 GLC A 1 502 502 GLC GLC . D 2 GLC A 1 503 503 GLC GLC . E 2 GLC A 1 504 504 GLC GLC . F 3 HOH A 1 601 167 HOH HOH . F 3 HOH A 2 602 188 HOH HOH . F 3 HOH A 3 603 153 HOH HOH . F 3 HOH A 4 604 132 HOH HOH . F 3 HOH A 5 605 174 HOH HOH . F 3 HOH A 6 606 149 HOH HOH . F 3 HOH A 7 607 16 HOH HOH . F 3 HOH A 8 608 185 HOH HOH . F 3 HOH A 9 609 46 HOH HOH . F 3 HOH A 10 610 34 HOH HOH . F 3 HOH A 11 611 140 HOH HOH . F 3 HOH A 12 612 156 HOH HOH . F 3 HOH A 13 613 50 HOH HOH . F 3 HOH A 14 614 184 HOH HOH . F 3 HOH A 15 615 113 HOH HOH . F 3 HOH A 16 616 17 HOH HOH . F 3 HOH A 17 617 54 HOH HOH . F 3 HOH A 18 618 25 HOH HOH . F 3 HOH A 19 619 27 HOH HOH . F 3 HOH A 20 620 203 HOH HOH . F 3 HOH A 21 621 109 HOH HOH . F 3 HOH A 22 622 135 HOH HOH . F 3 HOH A 23 623 217 HOH HOH . F 3 HOH A 24 624 37 HOH HOH . F 3 HOH A 25 625 94 HOH HOH . F 3 HOH A 26 626 59 HOH HOH . F 3 HOH A 27 627 82 HOH HOH . F 3 HOH A 28 628 152 HOH HOH . F 3 HOH A 29 629 53 HOH HOH . F 3 HOH A 30 630 38 HOH HOH . F 3 HOH A 31 631 197 HOH HOH . F 3 HOH A 32 632 60 HOH HOH . F 3 HOH A 33 633 83 HOH HOH . F 3 HOH A 34 634 151 HOH HOH . F 3 HOH A 35 635 199 HOH HOH . F 3 HOH A 36 636 127 HOH HOH . F 3 HOH A 37 637 18 HOH HOH . F 3 HOH A 38 638 1 HOH HOH . F 3 HOH A 39 639 139 HOH HOH . F 3 HOH A 40 640 6 HOH HOH . F 3 HOH A 41 641 77 HOH HOH . F 3 HOH A 42 642 22 HOH HOH . F 3 HOH A 43 643 211 HOH HOH . F 3 HOH A 44 644 202 HOH HOH . F 3 HOH A 45 645 73 HOH HOH . F 3 HOH A 46 646 9 HOH HOH . F 3 HOH A 47 647 180 HOH HOH . F 3 HOH A 48 648 118 HOH HOH . F 3 HOH A 49 649 136 HOH HOH . F 3 HOH A 50 650 43 HOH HOH . F 3 HOH A 51 651 75 HOH HOH . F 3 HOH A 52 652 194 HOH HOH . F 3 HOH A 53 653 117 HOH HOH . F 3 HOH A 54 654 176 HOH HOH . F 3 HOH A 55 655 128 HOH HOH . F 3 HOH A 56 656 24 HOH HOH . F 3 HOH A 57 657 186 HOH HOH . F 3 HOH A 58 658 74 HOH HOH . F 3 HOH A 59 659 84 HOH HOH . F 3 HOH A 60 660 134 HOH HOH . F 3 HOH A 61 661 20 HOH HOH . F 3 HOH A 62 662 42 HOH HOH . F 3 HOH A 63 663 72 HOH HOH . F 3 HOH A 64 664 81 HOH HOH . F 3 HOH A 65 665 198 HOH HOH . F 3 HOH A 66 666 4 HOH HOH . F 3 HOH A 67 667 103 HOH HOH . F 3 HOH A 68 668 205 HOH HOH . F 3 HOH A 69 669 14 HOH HOH . F 3 HOH A 70 670 193 HOH HOH . F 3 HOH A 71 671 206 HOH HOH . F 3 HOH A 72 672 108 HOH HOH . F 3 HOH A 73 673 88 HOH HOH . F 3 HOH A 74 674 213 HOH HOH . F 3 HOH A 75 675 11 HOH HOH . F 3 HOH A 76 676 52 HOH HOH . F 3 HOH A 77 677 15 HOH HOH . F 3 HOH A 78 678 142 HOH HOH . F 3 HOH A 79 679 207 HOH HOH . F 3 HOH A 80 680 87 HOH HOH . F 3 HOH A 81 681 124 HOH HOH . F 3 HOH A 82 682 12 HOH HOH . F 3 HOH A 83 683 170 HOH HOH . F 3 HOH A 84 684 48 HOH HOH . F 3 HOH A 85 685 30 HOH HOH . F 3 HOH A 86 686 93 HOH HOH . F 3 HOH A 87 687 31 HOH HOH . F 3 HOH A 88 688 181 HOH HOH . F 3 HOH A 89 689 7 HOH HOH . F 3 HOH A 90 690 70 HOH HOH . F 3 HOH A 91 691 115 HOH HOH . F 3 HOH A 92 692 159 HOH HOH . F 3 HOH A 93 693 150 HOH HOH . F 3 HOH A 94 694 58 HOH HOH . F 3 HOH A 95 695 143 HOH HOH . F 3 HOH A 96 696 178 HOH HOH . F 3 HOH A 97 697 65 HOH HOH . F 3 HOH A 98 698 33 HOH HOH . F 3 HOH A 99 699 51 HOH HOH . F 3 HOH A 100 700 209 HOH HOH . F 3 HOH A 101 701 215 HOH HOH . F 3 HOH A 102 702 112 HOH HOH . F 3 HOH A 103 703 97 HOH HOH . F 3 HOH A 104 704 201 HOH HOH . F 3 HOH A 105 705 23 HOH HOH . F 3 HOH A 106 706 63 HOH HOH . F 3 HOH A 107 707 133 HOH HOH . F 3 HOH A 108 708 69 HOH HOH . F 3 HOH A 109 709 106 HOH HOH . F 3 HOH A 110 710 171 HOH HOH . F 3 HOH A 111 711 91 HOH HOH . F 3 HOH A 112 712 98 HOH HOH . F 3 HOH A 113 713 187 HOH HOH . F 3 HOH A 114 714 148 HOH HOH . F 3 HOH A 115 715 26 HOH HOH . F 3 HOH A 116 716 96 HOH HOH . F 3 HOH A 117 717 105 HOH HOH . F 3 HOH A 118 718 36 HOH HOH . F 3 HOH A 119 719 164 HOH HOH . F 3 HOH A 120 720 173 HOH HOH . F 3 HOH A 121 721 129 HOH HOH . F 3 HOH A 122 722 71 HOH HOH . F 3 HOH A 123 723 10 HOH HOH . F 3 HOH A 124 724 2 HOH HOH . F 3 HOH A 125 725 175 HOH HOH . F 3 HOH A 126 726 154 HOH HOH . F 3 HOH A 127 727 61 HOH HOH . F 3 HOH A 128 728 99 HOH HOH . F 3 HOH A 129 729 195 HOH HOH . F 3 HOH A 130 730 120 HOH HOH . F 3 HOH A 131 731 80 HOH HOH . F 3 HOH A 132 732 212 HOH HOH . F 3 HOH A 133 733 29 HOH HOH . F 3 HOH A 134 734 62 HOH HOH . F 3 HOH A 135 735 126 HOH HOH . F 3 HOH A 136 736 78 HOH HOH . F 3 HOH A 137 737 32 HOH HOH . F 3 HOH A 138 738 218 HOH HOH . F 3 HOH A 139 739 104 HOH HOH . F 3 HOH A 140 740 35 HOH HOH . F 3 HOH A 141 741 116 HOH HOH . F 3 HOH A 142 742 95 HOH HOH . F 3 HOH A 143 743 101 HOH HOH . F 3 HOH A 144 744 219 HOH HOH . F 3 HOH A 145 745 141 HOH HOH . F 3 HOH A 146 746 8 HOH HOH . F 3 HOH A 147 747 76 HOH HOH . F 3 HOH A 148 748 85 HOH HOH . F 3 HOH A 149 749 45 HOH HOH . F 3 HOH A 150 750 102 HOH HOH . F 3 HOH A 151 751 57 HOH HOH . F 3 HOH A 152 752 40 HOH HOH . F 3 HOH A 153 753 100 HOH HOH . F 3 HOH A 154 754 5 HOH HOH . F 3 HOH A 155 755 110 HOH HOH . F 3 HOH A 156 756 210 HOH HOH . F 3 HOH A 157 757 161 HOH HOH . F 3 HOH A 158 758 21 HOH HOH . F 3 HOH A 159 759 19 HOH HOH . F 3 HOH A 160 760 68 HOH HOH . F 3 HOH A 161 761 13 HOH HOH . F 3 HOH A 162 762 130 HOH HOH . F 3 HOH A 163 763 208 HOH HOH . F 3 HOH A 164 764 196 HOH HOH . F 3 HOH A 165 765 131 HOH HOH . F 3 HOH A 166 766 155 HOH HOH . F 3 HOH A 167 767 166 HOH HOH . F 3 HOH A 168 768 169 HOH HOH . F 3 HOH A 169 769 39 HOH HOH . F 3 HOH A 170 770 172 HOH HOH . F 3 HOH A 171 771 183 HOH HOH . F 3 HOH A 172 772 122 HOH HOH . F 3 HOH A 173 773 67 HOH HOH . F 3 HOH A 174 774 114 HOH HOH . F 3 HOH A 175 775 56 HOH HOH . F 3 HOH A 176 776 177 HOH HOH . F 3 HOH A 177 777 163 HOH HOH . F 3 HOH A 178 778 168 HOH HOH . F 3 HOH A 179 779 125 HOH HOH . F 3 HOH A 180 780 86 HOH HOH . F 3 HOH A 181 781 92 HOH HOH . F 3 HOH A 182 782 192 HOH HOH . F 3 HOH A 183 783 119 HOH HOH . F 3 HOH A 184 784 44 HOH HOH . F 3 HOH A 185 785 216 HOH HOH . F 3 HOH A 186 786 49 HOH HOH . F 3 HOH A 187 787 41 HOH HOH . F 3 HOH A 188 788 111 HOH HOH . F 3 HOH A 189 789 3 HOH HOH . F 3 HOH A 190 790 191 HOH HOH . F 3 HOH A 191 791 79 HOH HOH . F 3 HOH A 192 792 162 HOH HOH . F 3 HOH A 193 793 200 HOH HOH . F 3 HOH A 194 794 146 HOH HOH . F 3 HOH A 195 795 107 HOH HOH . F 3 HOH A 196 796 28 HOH HOH . F 3 HOH A 197 797 182 HOH HOH . F 3 HOH A 198 798 214 HOH HOH . F 3 HOH A 199 799 204 HOH HOH . F 3 HOH A 200 800 220 HOH HOH . F 3 HOH A 201 801 121 HOH HOH . F 3 HOH A 202 802 160 HOH HOH . F 3 HOH A 203 803 157 HOH HOH . F 3 HOH A 204 804 89 HOH HOH . F 3 HOH A 205 805 189 HOH HOH . F 3 HOH A 206 806 138 HOH HOH . F 3 HOH A 207 807 64 HOH HOH . F 3 HOH A 208 808 145 HOH HOH . F 3 HOH A 209 809 147 HOH HOH . F 3 HOH A 210 810 47 HOH HOH . F 3 HOH A 211 811 137 HOH HOH . F 3 HOH A 212 812 144 HOH HOH . F 3 HOH A 213 813 90 HOH HOH . F 3 HOH A 214 814 55 HOH HOH . F 3 HOH A 215 815 190 HOH HOH . F 3 HOH A 216 816 66 HOH HOH . F 3 HOH A 217 817 165 HOH HOH . F 3 HOH A 218 818 221 HOH HOH . F 3 HOH A 219 819 158 HOH HOH . F 3 HOH A 220 820 123 HOH HOH . F 3 HOH A 221 821 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . D 2 -26.118 58.776 -57.229 1 64.67 ? C1 GLC 503 A 1 HETATM 2 C C2 GLC . . . D 2 -24.781 58.821 -58.132 1 65.28 ? C2 GLC 503 A 1 HETATM 3 C C3 GLC . . . D 2 -24.984 59.584 -59.451 1 60.98 ? C3 GLC 503 A 1 HETATM 4 C C4 GLC . . . D 2 -26.154 58.791 -60.03 1 69.2 ? C4 GLC 503 A 1 HETATM 5 C C5 GLC . . . D 2 -27.403 59.227 -59.249 1 51.28 ? C5 GLC 503 A 1 HETATM 6 C C6 GLC . . . D 2 -28.687 58.964 -59.993 1 48.01 ? C6 GLC 503 A 1 HETATM 7 O O1 GLC . . . D 2 -26.335 59.89 -56.37 1 56.94 ? O1 GLC 503 A 1 HETATM 8 O O2 GLC . . . D 2 -23.586 59.284 -57.485 1 57.24 ? O2 GLC 503 A 1 HETATM 9 O O3 GLC . . . D 2 -23.849 59.769 -60.373 1 35.62 ? O3 GLC 503 A 1 HETATM 10 O O4 GLC . . . D 2 -26.253 58.976 -61.445 1 119.14 ? O4 GLC 503 A 1 HETATM 11 O O5 GLC . . . D 2 -27.404 58.632 -57.938 1 52.35 ? O5 GLC 503 A 1 HETATM 12 O O6 GLC . . . D 2 -29.06 60.267 -60.477 1 34.95 ? O6 GLC 503 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #