data_7WDP # _model_server_result.job_id WyLVFB9SuxlRkFdnAFDNww _model_server_result.datetime_utc '2025-01-12 12:01:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7WDP # _exptl.entry_id 7WDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDP _cell.length_a 201.842 _cell.length_b 201.842 _cell.length_c 201.842 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 502 GLC 2 n B GLC 2 B 2 GLC A 503 GLC # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.412 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 83 n n C1 O1 GLC sing 84 n n C1 O5 GLC sing 85 n n C1 H1 GLC sing 86 n n C2 C3 GLC sing 87 n n C2 O2 GLC sing 88 n n C2 H2 GLC sing 89 n n C3 C4 GLC sing 90 n n C3 O3 GLC sing 91 n n C3 H3 GLC sing 92 n n C4 C5 GLC sing 93 n n C4 O4 GLC sing 94 n n C4 H4 GLC sing 95 n n C5 C6 GLC sing 96 n n C5 O5 GLC sing 97 n n C5 H5 GLC sing 98 n n C6 O6 GLC sing 99 n n C6 H61 GLC sing 100 n n C6 H62 GLC sing 101 n n O1 HO1 GLC sing 102 n n O2 HO2 GLC sing 103 n n O3 HO3 GLC sing 104 n n O4 HO4 GLC sing 105 n n O6 HO6 GLC sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7WDP _atom_sites.fract_transf_matrix[1][1] 0.004954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLC A 1 501 501 GLC GLC . D 4 SO4 A 1 502 601 SO4 SO4 . E 5 HOH A 1 601 87 HOH HOH . E 5 HOH A 2 602 103 HOH HOH . E 5 HOH A 3 603 59 HOH HOH . E 5 HOH A 4 604 107 HOH HOH . E 5 HOH A 5 605 2 HOH HOH . E 5 HOH A 6 606 4 HOH HOH . E 5 HOH A 7 607 10 HOH HOH . E 5 HOH A 8 608 57 HOH HOH . E 5 HOH A 9 609 105 HOH HOH . E 5 HOH A 10 610 88 HOH HOH . E 5 HOH A 11 611 44 HOH HOH . E 5 HOH A 12 612 116 HOH HOH . E 5 HOH A 13 613 108 HOH HOH . E 5 HOH A 14 614 110 HOH HOH . E 5 HOH A 15 615 5 HOH HOH . E 5 HOH A 16 616 3 HOH HOH . E 5 HOH A 17 617 78 HOH HOH . E 5 HOH A 18 618 104 HOH HOH . E 5 HOH A 19 619 132 HOH HOH . E 5 HOH A 20 620 51 HOH HOH . E 5 HOH A 21 621 122 HOH HOH . E 5 HOH A 22 622 74 HOH HOH . E 5 HOH A 23 623 27 HOH HOH . E 5 HOH A 24 624 1 HOH HOH . E 5 HOH A 25 625 61 HOH HOH . E 5 HOH A 26 626 35 HOH HOH . E 5 HOH A 27 627 124 HOH HOH . E 5 HOH A 28 628 50 HOH HOH . E 5 HOH A 29 629 9 HOH HOH . E 5 HOH A 30 630 12 HOH HOH . E 5 HOH A 31 631 98 HOH HOH . E 5 HOH A 32 632 91 HOH HOH . E 5 HOH A 33 633 64 HOH HOH . E 5 HOH A 34 634 80 HOH HOH . E 5 HOH A 35 635 47 HOH HOH . E 5 HOH A 36 636 42 HOH HOH . E 5 HOH A 37 637 113 HOH HOH . E 5 HOH A 38 638 102 HOH HOH . E 5 HOH A 39 639 73 HOH HOH . E 5 HOH A 40 640 106 HOH HOH . E 5 HOH A 41 641 19 HOH HOH . E 5 HOH A 42 642 62 HOH HOH . E 5 HOH A 43 643 54 HOH HOH . E 5 HOH A 44 644 53 HOH HOH . E 5 HOH A 45 645 14 HOH HOH . E 5 HOH A 46 646 68 HOH HOH . E 5 HOH A 47 647 72 HOH HOH . E 5 HOH A 48 648 129 HOH HOH . E 5 HOH A 49 649 16 HOH HOH . E 5 HOH A 50 650 40 HOH HOH . E 5 HOH A 51 651 126 HOH HOH . E 5 HOH A 52 652 63 HOH HOH . E 5 HOH A 53 653 97 HOH HOH . E 5 HOH A 54 654 133 HOH HOH . E 5 HOH A 55 655 90 HOH HOH . E 5 HOH A 56 656 23 HOH HOH . E 5 HOH A 57 657 30 HOH HOH . E 5 HOH A 58 658 109 HOH HOH . E 5 HOH A 59 659 20 HOH HOH . E 5 HOH A 60 660 114 HOH HOH . E 5 HOH A 61 661 18 HOH HOH . E 5 HOH A 62 662 92 HOH HOH . E 5 HOH A 63 663 46 HOH HOH . E 5 HOH A 64 664 94 HOH HOH . E 5 HOH A 65 665 11 HOH HOH . E 5 HOH A 66 666 65 HOH HOH . E 5 HOH A 67 667 43 HOH HOH . E 5 HOH A 68 668 39 HOH HOH . E 5 HOH A 69 669 13 HOH HOH . E 5 HOH A 70 670 25 HOH HOH . E 5 HOH A 71 671 49 HOH HOH . E 5 HOH A 72 672 28 HOH HOH . E 5 HOH A 73 673 117 HOH HOH . E 5 HOH A 74 674 34 HOH HOH . E 5 HOH A 75 675 36 HOH HOH . E 5 HOH A 76 676 69 HOH HOH . E 5 HOH A 77 677 79 HOH HOH . E 5 HOH A 78 678 7 HOH HOH . E 5 HOH A 79 679 118 HOH HOH . E 5 HOH A 80 680 26 HOH HOH . E 5 HOH A 81 681 31 HOH HOH . E 5 HOH A 82 682 32 HOH HOH . E 5 HOH A 83 683 77 HOH HOH . E 5 HOH A 84 684 125 HOH HOH . E 5 HOH A 85 685 38 HOH HOH . E 5 HOH A 86 686 55 HOH HOH . E 5 HOH A 87 687 41 HOH HOH . E 5 HOH A 88 688 33 HOH HOH . E 5 HOH A 89 689 45 HOH HOH . E 5 HOH A 90 690 15 HOH HOH . E 5 HOH A 91 691 29 HOH HOH . E 5 HOH A 92 692 128 HOH HOH . E 5 HOH A 93 693 81 HOH HOH . E 5 HOH A 94 694 24 HOH HOH . E 5 HOH A 95 695 37 HOH HOH . E 5 HOH A 96 696 76 HOH HOH . E 5 HOH A 97 697 111 HOH HOH . E 5 HOH A 98 698 130 HOH HOH . E 5 HOH A 99 699 131 HOH HOH . E 5 HOH A 100 700 85 HOH HOH . E 5 HOH A 101 701 96 HOH HOH . E 5 HOH A 102 702 8 HOH HOH . E 5 HOH A 103 703 58 HOH HOH . E 5 HOH A 104 704 119 HOH HOH . E 5 HOH A 105 705 82 HOH HOH . E 5 HOH A 106 706 120 HOH HOH . E 5 HOH A 107 707 60 HOH HOH . E 5 HOH A 108 708 67 HOH HOH . E 5 HOH A 109 709 21 HOH HOH . E 5 HOH A 110 710 70 HOH HOH . E 5 HOH A 111 711 100 HOH HOH . E 5 HOH A 112 712 127 HOH HOH . E 5 HOH A 113 713 137 HOH HOH . E 5 HOH A 114 714 48 HOH HOH . E 5 HOH A 115 715 115 HOH HOH . E 5 HOH A 116 716 136 HOH HOH . E 5 HOH A 117 717 95 HOH HOH . E 5 HOH A 118 718 112 HOH HOH . E 5 HOH A 119 719 6 HOH HOH . E 5 HOH A 120 720 22 HOH HOH . E 5 HOH A 121 721 17 HOH HOH . E 5 HOH A 122 722 56 HOH HOH . E 5 HOH A 123 723 99 HOH HOH . E 5 HOH A 124 724 75 HOH HOH . E 5 HOH A 125 725 121 HOH HOH . E 5 HOH A 126 726 86 HOH HOH . E 5 HOH A 127 727 134 HOH HOH . E 5 HOH A 128 728 84 HOH HOH . E 5 HOH A 129 729 135 HOH HOH . E 5 HOH A 130 730 93 HOH HOH . E 5 HOH A 131 731 83 HOH HOH . E 5 HOH A 132 732 101 HOH HOH . E 5 HOH A 133 733 89 HOH HOH . E 5 HOH A 134 734 66 HOH HOH . E 5 HOH A 135 735 71 HOH HOH . E 5 HOH A 136 736 123 HOH HOH . E 5 HOH A 137 737 52 HOH HOH . E 5 HOH A 138 738 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . C 3 -20.062 71.289 -76.517 1 45.71 ? C1 GLC 501 A 1 HETATM 2 C C2 GLC . . . C 3 -20.992 71.465 -75.196 1 56.38 ? C2 GLC 501 A 1 HETATM 3 C C3 GLC . . . C 3 -20.129 71.84 -73.903 1 52.76 ? C3 GLC 501 A 1 HETATM 4 C C4 GLC . . . C 3 -18.663 71.276 -73.971 1 46.02 ? C4 GLC 501 A 1 HETATM 5 C C5 GLC . . . C 3 -17.967 71.507 -75.304 1 40.89 ? C5 GLC 501 A 1 HETATM 6 C C6 GLC . . . C 3 -16.612 70.902 -75.204 1 40.25 ? C6 GLC 501 A 1 HETATM 7 O O1 GLC . . . C 3 -20.007 72.481 -77.266 1 52.39 ? O1 GLC 501 A 1 HETATM 8 O O2 GLC . . . C 3 -22.279 72.246 -75.284 1 38.74 ? O2 GLC 501 A 1 HETATM 9 O O3 GLC . . . C 3 -20.851 71.4 -72.741 1 38.25 ? O3 GLC 501 A 1 HETATM 10 O O4 GLC . . . C 3 -17.801 71.898 -73.085 1 38.68 ? O4 GLC 501 A 1 HETATM 11 O O5 GLC . . . C 3 -18.665 70.862 -76.385 1 36.94 ? O5 GLC 501 A 1 HETATM 12 O O6 GLC . . . C 3 -16.809 69.499 -75.383 1 43.71 ? O6 GLC 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #